Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021758
         (698 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93394-7|CAD59169.1|  196|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL117203-25|CAD59172.1|  196|Caenorhabditis elegans Hypothetical...    30   1.8  
U53149-2|AAM29664.1|  451|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z71266-10|CAA95838.3|  491|Caenorhabditis elegans Hypothetical p...    28   5.6  
AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring fin...    28   5.6  
J03146-1|AAA65468.1|  324|Caenorhabditis elegans collagen protein.     27   9.8  

>Z93394-7|CAD59169.1|  196|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1c protein.
          Length = 196

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 466 PDRLGSKTRPRLQEPKAWKEGPFDWDEYLSATSSV--PAPDYCFGTKQPLKGIEVNMKLE 639
           P   G K +    E  AW+EG F  DE ++ TSS+   A ++     +P K      +L+
Sbjct: 11  PQPRGGKKKDADDEKNAWEEGDF-IDEKITNTSSLLRQAEEHRSSIVEPTKDRIEKERLD 69

Query: 640 AVNPQNHEEIHVARVD 687
            + P + EE   A VD
Sbjct: 70  RLVPDD-EEFENASVD 84


>AL117203-25|CAD59172.1|  196|Caenorhabditis elegans Hypothetical
           protein Y48E1C.1c protein.
          Length = 196

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +1

Query: 466 PDRLGSKTRPRLQEPKAWKEGPFDWDEYLSATSSV--PAPDYCFGTKQPLKGIEVNMKLE 639
           P   G K +    E  AW+EG F  DE ++ TSS+   A ++     +P K      +L+
Sbjct: 11  PQPRGGKKKDADDEKNAWEEGDF-IDEKITNTSSLLRQAEEHRSSIVEPTKDRIEKERLD 69

Query: 640 AVNPQNHEEIHVARVD 687
            + P + EE   A VD
Sbjct: 70  RLVPDD-EEFENASVD 84


>U53149-2|AAM29664.1|  451|Caenorhabditis elegans Hypothetical
           protein C24B5.2a protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 137 VSPYS*RSRSCSAVG*RKISRAAVGPRRSRRTAPAACP 24
           V P   +SRS +    R  S A V PR +R TAPA+ P
Sbjct: 105 VDPNVKQSRSATVGPSRPASAARVTPRPTRATAPASLP 142


>Z71266-10|CAA95838.3|  491|Caenorhabditis elegans Hypothetical
           protein R06C7.7 protein.
          Length = 491

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
 Frame = +1

Query: 439 VRLHAPLHLPDRLGSKTRPRLQEPKAWKEGPFDWDEYLSATSSVPAPDYCF---GTKQPL 609
           + ++     P     K    L  P  +K G F WDEYL   S+   P   F    +++ L
Sbjct: 357 IHINNTFMFPVGYAEKYNLELVPPDEFK-GTFRWDEYLEKESAETLPLDLFKPMPSQERL 415

Query: 610 KGIEVNMKLEAVNPQNHEEIHVARVDCI 693
              +V ++LEA +   ++ I  A V  +
Sbjct: 416 DKFKVGLRLEAADMCENQFICPATVKSV 443


>AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 3 protein.
          Length = 691

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 5   TVCENVGGRLLVRYDGCDEDLQQLWIFFSNPRL--SSFGYVTNKGSPWQFKYPGKVNKF 175
           TV   VGGR  +    CD    Q+ + F++ ++  ++ G ++ KG       PG   KF
Sbjct: 604 TVMPKVGGRFNITTVTCDVTTGQIVVIFTDKKMDRTNIGVISYKGDFLYSIEPGPHEKF 662


>J03146-1|AAA65468.1|  324|Caenorhabditis elegans collagen protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +3

Query: 609 EGNRSEHEAGSGEPTEPRGD--PRGPRG 686
           +G  +EH  G   P  PRGD  P GP G
Sbjct: 228 KGRDAEHPIGGPGPKGPRGDQGPTGPAG 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,033,849
Number of Sequences: 27780
Number of extensions: 304384
Number of successful extensions: 963
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)