Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021758
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 178  VQEQTERSAPTERRGGHQGTHAA*SLVPNQSLEAHNFVTGM 300
            +Q  T     T R  GH   H+A S+V + +    N  T +
Sbjct: 923  IQVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNVTTNL 963


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 136  TVAVQIPRESEQVFVQEQTERSAPTERRGGHQG 234
            T+ VQ+P  +  ++V   T  S     + GH G
Sbjct: 1398 TLTVQVPPSAPVLYVTSSTSSSILLHWKSGHNG 1430


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 136  TVAVQIPRESEQVFVQEQTERSAPTERRGGHQG 234
            T+ VQ+P  +  ++V   T  S     + GH G
Sbjct: 1394 TLTVQVPPSAPVLYVTSSTSSSILLHWKSGHNG 1426


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 256 VPNQSLEAHNFVTGMKLEAL*PSGHEDGATGHRLQGVQQLPF 381
           V  +S   H+ + GM L  +  + +    T H L  V   PF
Sbjct: 243 VAGESFTVHDGIFGMALSPVTNNLYYSPLTSHSLYYVNMEPF 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,117
Number of Sequences: 438
Number of extensions: 3331
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)