Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021758
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23780.1 68418.m02792 agenet domain-containing protein contai...    31   0.97 
At3g19050.1 68416.m02420 kinesin motor protein-related contains ...    29   3.0  
At1g64410.1 68414.m07301 hypothetical protein                          29   3.9  
At5g20580.2 68418.m02444 expressed protein predicted protein, Ar...    28   5.2  
At5g20580.1 68418.m02443 expressed protein predicted protein, Ar...    28   5.2  
At3g06840.1 68416.m00811 expressed protein                             28   6.8  
At3g30560.1 68416.m03867 hypothetical protein                          27   9.0  

>At5g23780.1 68418.m02792 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 426

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 143 QFKYPGKV--NKFSCKNKLSAQLRQSAEEAIKEPTPPDLSCQ 262
           ++KY  +V    FSCK   +A+L ++ +     PTPP +S +
Sbjct: 35  EYKYIVRVYDKSFSCKGNKAARLNKTVDLCSLRPTPPSISVE 76


>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
            profile: PF00225 Kinesin motor domain; contains
            non-consensus splice site (GC) at intron 12
          Length = 2722

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 541  DEYLSATSSVPAPDYCFGTKQPLKGIEVNMKLEAVNPQNHEE 666
            D+Y  A +S+ +P +C   ++P + + V+  +E     NH E
Sbjct: 1348 DKYTEAENSLSSPAHCSEGQEPGRNVVVSSCIEKTPNNNHTE 1389


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +2

Query: 83  FFSNPRLSSFGYVTNKGSPWQFKYPGKVNKFSCKNKLSAQLRQSAEEAIKEPTPPDLSCQ 262
           F   PR  +  Y+        F +P     F+C  K    +R   E  +K    PD+ C+
Sbjct: 341 FTGGPRYMTNNYLDAMAICKHFGFPSLFITFTCNPKWPEIVRFCKERNLKSEDRPDIICR 400

Query: 263 I 265
           I
Sbjct: 401 I 401


>At5g20580.2 68418.m02444 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 348

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -2

Query: 391 SDEEMEVVEHLGDGGRSHRPHVLRVTGPLTSYLLRSYAPPSSDLAREIRRRG-FLDGLLG 215
           SD++M ++++  +        +LR+   L+ Y     + P  DLA  +  R   L  L  
Sbjct: 207 SDQQMALLQYQRENLHYLSEEILRLQESLSKYETNGSSTPQVDLAHLVATRDQELRTLSA 266

Query: 214 ALSELSAQFVLARKLV 167
            + +L ++  LAR L+
Sbjct: 267 EVDQLHSELNLARSLI 282


>At5g20580.1 68418.m02443 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 348

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -2

Query: 391 SDEEMEVVEHLGDGGRSHRPHVLRVTGPLTSYLLRSYAPPSSDLAREIRRRG-FLDGLLG 215
           SD++M ++++  +        +LR+   L+ Y     + P  DLA  +  R   L  L  
Sbjct: 207 SDQQMALLQYQRENLHYLSEEILRLQESLSKYETNGSSTPQVDLAHLVATRDQELRTLSA 266

Query: 214 ALSELSAQFVLARKLV 167
            + +L ++  LAR L+
Sbjct: 267 EVDQLHSELNLARSLI 282


>At3g06840.1 68416.m00811 expressed protein
          Length = 187

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 359 WRRWPVAPSSCPEGHRASNFIPVT 288
           WR+WP++     E  R  NF  VT
Sbjct: 88  WRKWPISTVGVNEDRRVRNFRSVT 111


>At3g30560.1 68416.m03867 hypothetical protein
          Length = 1473

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/61 (24%), Positives = 23/61 (37%)
 Frame = +2

Query: 83  FFSNPRLSSFGYVTNKGSPWQFKYPGKVNKFSCKNKLSAQLRQSAEEAIKEPTPPDLSCQ 262
           F   P      Y+   G+   F +P     F+C +K     R   E  +     PD+ C+
Sbjct: 468 FTGGPAYMQQNYLDAMGTCKHFGFPDLFITFTCNSKWPKITRFVKERKLNAEDKPDIICR 527

Query: 263 I 265
           I
Sbjct: 528 I 528


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,357
Number of Sequences: 28952
Number of extensions: 287950
Number of successful extensions: 761
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)