Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021757X
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 64 7e-12
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 27 1.3
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 25 4.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 4.1
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 5.4
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 25 5.4
SPAC23C4.07 |tht2|mug22|meiotically upregulated gene Mug22|Schiz... 25 5.4
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 25 5.4
SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces pombe... 25 5.4
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 25 5.4
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.1
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 7.1
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 7.1
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 24 9.4
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 24 9.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 24 9.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 64.5 bits (150), Expect = 7e-12
Identities = 30/63 (47%), Positives = 38/63 (60%)
Frame = +1
Query: 259 SLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV + V
Sbjct: 78 TLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEV 137
Query: 439 KTM 447
K +
Sbjct: 138 KQL 140
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 27.1 bits (57), Expect = 1.3
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Frame = +1
Query: 226 SEHASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEY------RNNHEVTVSGVEVHNP 387
++ A R+G + +Q F + F+D P + + + NH+ V+ V+ P
Sbjct: 255 TKSAVMRIGLLEMQKFGRMFFDCKPLTMSEESCGIADLITTCLGGRNHKCAVAFVKTGKP 314
Query: 388 IQYFEEANFPDYVQQGVKT 444
+ E+ QG T
Sbjct: 315 MHVVEQELLDGQKLQGAAT 333
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 4.1
Identities = 8/34 (23%), Positives = 22/34 (64%)
Frame = +1
Query: 340 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
+ ++ +++ G ++ NP++ +EEA P + + +K
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLK 265
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 4.1
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 448 PLSLHLVAHNQENL--LLQSIE 389
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 5.4
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +1
Query: 268 PFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 393
PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 117 PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 5.4
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +3
Query: 210 KNSLEVRTCVAQIGICF 260
+NS+++ +C+ Q+G CF
Sbjct: 294 QNSIKIISCLYQVGFCF 310
>SPAC23C4.07 |tht2|mug22|meiotically upregulated gene
Mug22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 284 KFLLKGWSETNPNLGDACSDLQRILFSHQN 195
K +K S+ NP+ GD +L +I S +N
Sbjct: 17 KTYMKSLSDDNPSFGDVTVNLTKISVSSKN 46
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 5.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 269 LSTKTFMIHILQFSKDHHMKSKSTEIIT 352
+STK H+L S D H+ ++ E++T
Sbjct: 340 ISTKALR-HVLNLSYDFHLNKRAGEVLT 366
>SPCC622.17 |apn1||AP endonuclease Apn1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 342
Score = 25.0 bits (52), Expect = 5.4
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +1
Query: 223 RSEHASPRLGFVSLQPF----NKNFYDPHPTVLKRSPYEVEEYRNNHEV 357
R H + LGF+ L+PF N + +D P VL+ E+++ E+
Sbjct: 219 RDLHENIGLGFLGLEPFRLIMNDSRWDGIPLVLETPAKSPEQWKKEVEL 267
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = -1
Query: 266 WSETNPNLGDACSDLQRILFSHQNLQILQIYCHRCQN 156
++ + N+ D +++ + H +L +LQ CQN
Sbjct: 58 YNRVSSNIYDTLKEMESLQVIHSHLPVLQKGLQECQN 94
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 94 IIPVTR-HD*FSDLVEDVYLNYGFFLTQ 14
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 337 YRNNHEVTVSGVEVHNPIQYFE 402
Y N+ + G EVHNP FE
Sbjct: 290 YMNSESQNLLGDEVHNPFSDFE 311
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 24.6 bits (51), Expect = 7.1
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +1
Query: 211 RILWRSEHASPR 246
R+LW++EH SP+
Sbjct: 544 RLLWKNEHGSPK 555
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 24.2 bits (50), Expect = 9.4
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +2
Query: 257 FHSNLSTKTFMIHILQFSKDHHMKSKSTEIIT 352
FH + F+ HI +F K+++ ++ I+T
Sbjct: 381 FHLMTAPPYFIFHIKRFMKNNYFTERNQTIVT 412
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 9.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 274 NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNP 387
N ++YD +LK+ + E +R N +V EV NP
Sbjct: 343 NNDYYDNAARILKQMFHVAERHRRNRVPSVQ--EVLNP 378
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 319 PYEVEEYRNNHEVTVS 366
PYE++ YRN H +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,219
Number of Sequences: 5004
Number of extensions: 29335
Number of successful extensions: 80
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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