Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021757X
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1758 - 39681942-39682030,39682115-39682345,39682643-396826... 71 3e-13
01_01_0682 - 5244805-5244919,5246468-5246613,5246813-5246994,524... 56 1e-08
03_02_0758 + 10954268-10954841,10955988-10957145,10957176-109572... 50 1e-06
08_01_0397 - 3509186-3510291,3510322-3512335 39 0.002
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310... 36 0.015
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 34 0.046
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 33 0.11
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 31 0.32
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 28 4.0
07_01_1218 - 11633829-11634628,11634713-11635050,11635349-116354... 28 4.0
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 28 4.0
04_01_0618 - 8094991-8097288 27 7.0
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784 27 9.2
01_04_0011 + 15067536-15068236,15068283-15068898 27 9.2
>01_06_1758 -
39681942-39682030,39682115-39682345,39682643-39682679,
39683604-39683835,39683937-39684022,39684126-39684218,
39684302-39684465,39684541-39684702,39684783-39684962,
39685079-39685515,39685614-39685669
Length = 588
Score = 71.3 bits (167), Expect = 3e-13
Identities = 31/66 (46%), Positives = 41/66 (62%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F SL PF KNFY P V S +V +YR ++TV G +V P++YF+EANFPD
Sbjct: 106 PKPDFRSLIPFEKNFYVECPAVQAMSDMDVSQYRRQRDITVEGHDVPKPVRYFQEANFPD 165
Query: 421 YVQQGV 438
Y Q +
Sbjct: 166 YCMQAI 171
>01_01_0682 -
5244805-5244919,5246468-5246613,5246813-5246994,
5247069-5247295,5247382-5247467,5247564-5247656,
5247964-5248118,5248407-5248490,5248589-5248768,
5249587-5249828,5249927-5249982
Length = 521
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/72 (36%), Positives = 39/72 (54%)
Frame = +1
Query: 223 RSEHASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFE 402
+++ A+ L F KNFY P+V + EVE YR E+TV G +V P++ F
Sbjct: 35 KADSAAAAADLDGLPRFEKNFYVESPSVAGMTEEEVEAYRRRREITVEGRDVPKPVREFR 94
Query: 403 EANFPDYVQQGV 438
+ FP+YV Q +
Sbjct: 95 DVGFPEYVLQEI 106
>03_02_0758 +
10954268-10954841,10955988-10957145,10957176-10957216,
10957412-10957448,10957534-10957954,10958201-10958234
Length = 754
Score = 49.6 bits (113), Expect = 1e-06
Identities = 21/54 (38%), Positives = 32/54 (59%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFP 417
+ +PFNK+FY+ P+V S EV +Y + + VSG +V PI+ F + FP
Sbjct: 174 IEYEPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFP 227
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ QPF KNFY + K + EV YR E+ V G +V PI+ + ++ +
Sbjct: 379 IDYQPFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDT 438
Query: 436 VKTM 447
+K +
Sbjct: 439 IKKL 442
>08_01_0353 -
3107628-3107774,3108177-3108213,3108248-3109164,
3109210-3110952
Length = 947
Score = 35.9 bits (79), Expect = 0.015
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ QPF KN Y + + EV YR N E+ V G +V PI+ + ++ +
Sbjct: 240 IEYQPFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDT 299
Query: 436 VKTM 447
+K +
Sbjct: 300 IKKL 303
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 34.3 bits (75), Expect = 0.046
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
E YR+ HE+TV G V PI FE FP + + ++
Sbjct: 130 EAYRHRHEITVVGDNVPAPITSFETGGFPPEILKEIQ 166
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 33.1 bits (72), Expect = 0.11
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 259 SLQPFNKNFYDPH-PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
S++P ++ F P+ P++ + YR +HEVT G V P FE FP + Q
Sbjct: 564 SMRPPSRMFAPPNFPSIAS-----ADAYRQHHEVTAVGENVPPPFMTFEATGFPPEILQE 618
Query: 436 V 438
+
Sbjct: 619 I 619
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 31.5 bits (68), Expect = 0.32
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
E YR HE+T+ G E P F+ FP + + V+
Sbjct: 160 EAYRAKHEITIVGNEAPAPFMTFQSTGFPPEILREVQ 196
>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 233 MRRPDWDLFHSNLSTKTFMIHILQFSKDHH 322
MR PD D S K F IH+ S DHH
Sbjct: 1226 MRSPDDDKPTSWSDQKVFEIHVYPSSNDHH 1255
>07_01_1218 -
11633829-11634628,11634713-11635050,11635349-11635445,
11635482-11635725,11636114-11636122
Length = 495
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 274 NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQY 396
NK+ Y+ ++ R+P + E+Y NN ++ EV P+++
Sbjct: 137 NKHKYNELGNIIPRTPTDQEKYGNNSSYILNIEEVILPLEF 177
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 316 SPYEVEEYRNNHEVTVSGVEVHN 384
SP +EE N E+ V GV++HN
Sbjct: 431 SPQMIEEMNNVRELNVKGVKLHN 453
>04_01_0618 - 8094991-8097288
Length = 765
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 399 KVLNRIMNLNATYSYLVIISVLFD 328
K+L +M +N YSY VI + LFD
Sbjct: 327 KILQFLMAINTNYSYRVIRAGLFD 350
>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
Length = 1035
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 316 SPYEVEEYRNNHEVTVSGVEVHN 384
SP +EE N E+ V GV+ HN
Sbjct: 431 SPQMIEEMNNVRELNVEGVKPHN 453
>01_04_0011 + 15067536-15068236,15068283-15068898
Length = 438
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 266 NLSTKTFMIHILQFSKDHHMKSKSTE 343
NLS K + +L+ +K+ H+ SKST+
Sbjct: 196 NLSGKEVALELLRVAKEVHLSSKSTK 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,088,713
Number of Sequences: 37544
Number of extensions: 168445
Number of successful extensions: 350
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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