Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021757X
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   2e-06
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)                  46   2e-05
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.082
SB_43842| Best HMM Match : RNB (HMM E-Value=0)                         30   0.77 
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)                         30   1.0  
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)                 29   1.8  
SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18)                    27   5.4  

>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 790

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +1

Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
           P    +  +PFNKNFY+ HP + K+S  E+++ R    + VSG     P   F    F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526

Query: 421 YVQQGVKTM 447
            +   ++ +
Sbjct: 527 QMMASIRKL 535


>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
          Length = 690

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 19/43 (44%), Positives = 28/43 (65%)
 Frame = +1

Query: 313 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
           R  +EV+ YR + ++TV+G  V  P+  FEE+ FPDY+Q   K
Sbjct: 57  RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFK 99


>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 592

 Score = 33.5 bits (73), Expect = 0.082
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +1

Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQ 393
           V  QPF K+FY   P + K +P E +E+R + E + V G     P++
Sbjct: 59  VVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVK 105


>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
          Length = 1238

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 271 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFP 417
           F  ++YD +  V + S   V+E R  + + + G +   PI+ F + N P
Sbjct: 32  FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLP 80


>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
          Length = 675

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 283 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 423
           + D    VL     E EE  NN  H++ +  + +HNP  YFE+ +  DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264


>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
          Length = 1199

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 227 QNMRRPDWDLFHSNLSTKTFMIHILQFSKD 316
           +N RR  WD FHSN+S  +   H+  F  D
Sbjct: 768 RNKRR--WDSFHSNVSADSGSAHMFDFDTD 795


>SB_50226| Best HMM Match : LEA_4 (HMM E-Value=0.18)
          Length = 760

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 205 EKRILWRSEHASPRLGFVSLQPFNKNFYDP 294
           +KR+L+ S  AS  +GFVS +P N +  DP
Sbjct: 53  DKRLLFLSSQASHNIGFVS-RPQNSHRSDP 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,005,205
Number of Sequences: 59808
Number of extensions: 209759
Number of successful extensions: 488
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)