Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021757X
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 65 2e-11
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 56 8e-09
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 56 8e-09
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 48 2e-06
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 39 0.002
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 38 0.004
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 37 0.007
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 37 0.007
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 37 0.007
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 34 0.051
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 31 0.36
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 1.5
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 1.5
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 29 1.9
At2g33420.1 68415.m04096 expressed protein 28 2.5
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 3.4
At3g19515.1 68416.m02473 expressed protein 27 7.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 65.3 bits (152), Expect = 2e-11
Identities = 32/69 (46%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 238 SPR-LGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 414
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 415 PDYVQQGVK 441
PDYV + VK
Sbjct: 107 PDYVLEEVK 115
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 56.4 bits (130), Expect = 8e-09
Identities = 24/66 (36%), Positives = 39/66 (59%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGV 438
+ + +
Sbjct: 175 NILEAI 180
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 56.4 bits (130), Expect = 8e-09
Identities = 24/66 (36%), Positives = 39/66 (59%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGV 438
+ + +
Sbjct: 175 NILEAI 180
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 48.4 bits (110), Expect = 2e-06
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 436 VK 441
+K
Sbjct: 243 IK 244
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 436 VKTM 447
+K +
Sbjct: 544 MKKL 547
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 37.5 bits (83), Expect = 0.004
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 436 VKTM 447
+K +
Sbjct: 411 LKKL 414
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 36.7 bits (81), Expect = 0.007
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFP 417
P P+ S E Y HE+TVSG +V P+ FE FP
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFP 166
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 36.7 bits (81), Expect = 0.007
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFP 417
P P+ S E Y HE+TVSG +V P+ FE FP
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFP 166
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 36.7 bits (81), Expect = 0.007
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFP 417
P P+ S E Y HE+TVSG +V P+ FE FP
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFP 166
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 33.9 bits (74), Expect = 0.051
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 274 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFP 417
NK+ PH P V SP E+ YR HEVT +G + P FE + P
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLP 443
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 29.1 bits (62), Expect = 1.5
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +1
Query: 250 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFP 417
G +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFP 105
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 2.5
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 19 SKRIHSLNKHLQLNPKI 69
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At3g19515.1 68416.m02473 expressed protein
Length = 507
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDY 423
E E N E G HNP + EE +PD+
Sbjct: 387 ETESEEENPEDNQKGNPEHNPKEKSEEMQYPDF 419
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,409,143
Number of Sequences: 28952
Number of extensions: 144604
Number of successful extensions: 416
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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