Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021756
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   114   1e-26
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    33   0.044
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    28   1.3  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.2  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   2.2  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   2.2  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   2.2  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    27   2.9  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    27   3.8  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    26   5.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   6.7  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    25   8.9  
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    25   8.9  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   8.9  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  114 bits (275), Expect = 1e-26
 Identities = 54/94 (57%), Positives = 70/94 (74%)
 Frame = +3

Query: 231 GKKHNDAQAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 410
           GK     +A++  +++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP A
Sbjct: 54  GKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNA 113

Query: 411 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 512
           IAPL V +PA NTG+ P KTSFFQAL IPTKI+R
Sbjct: 114 IAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITR 147



 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 45/88 (51%), Positives = 60/88 (68%)
 Frame = +2

Query: 494 PYQDFKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEI 673
           P +  +GTIEI +DVH++    KVG SEATLLNMLNISPF+YG+ V  +YD G +F+PEI
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEI 201

Query: 674 LDIKPEDLRAKFQAGVANVAALSLAIGY 757
           LD+  EDL     +  + + A+SL   Y
Sbjct: 202 LDVSEEDLIGHLLSAASIITAISLGANY 229



 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 26/54 (48%), Positives = 38/54 (70%)
 Frame = +1

Query: 94  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTMMRK 255
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++ ++MGKNTM+R+
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRR 61


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 261 KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP-ARPGAIAPLSVVIP 437
           ++H +N   L KLL    G VG +FT     EV     E+ VQ   AR GA+AP + VIP
Sbjct: 83  EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIP 138

Query: 438 A 440
           A
Sbjct: 139 A 139


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -3

Query: 192 LLHLLRAHVIGTHDETFWVLVQELD---DLNEVVRLPSSLV 79
           L+H L  +V G HD +FW L ++L    D  +++  P S V
Sbjct: 200 LIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYV 240


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 192 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 67
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 192 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 67
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 192 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 67
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 256 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 297


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 192 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 67
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 367 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 269
           L +T  +S    + PTLP +   + S +G+LSR
Sbjct: 35  LKQTVLQSSSFKSFPTLPRLAARNISNSGILSR 67


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = +1

Query: 238 NTMMRKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLP 417
           N+    PS + W T+  SR     SR   +S SP+  S +        + K  L L+ + 
Sbjct: 181 NSWWEDPSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTIPAIQKKKSL-LIEMM 239

Query: 418 HCQSSF 435
             +S++
Sbjct: 240 ETESTY 245


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -2

Query: 463 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPR---VNTKPTLPLMCGNSF 293
           +G  PV    +  + G++ P  AGAW L  N L    T   +   +NT P  PL  G  F
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKMIVINT-PHNPL--GKIF 194

Query: 292 SRAGL 278
           S   L
Sbjct: 195 SEEEL 199


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/66 (22%), Positives = 29/66 (43%)
 Frame = +1

Query: 259 SKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKLQLVLVPLPHCQSSFP 438
           S T  T+   +   C TS + L + +P  ++  + TNC  T + +     P+     +  
Sbjct: 518 SSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNC-TTSTSVPYTSTPVTSSNYTIS 576

Query: 439 PTTPAS 456
            +TP +
Sbjct: 577 SSTPVT 582


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -3

Query: 195 DLLHLLRAHVIGTHDETF-WVLV 130
           DLL +L+  +  THDE+  W++V
Sbjct: 338 DLLSMLKEQITHTHDESLEWIVV 360


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 376 SNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMACASLCFFP 230
           SNS+   S+ S  +  +P   + C  +F+    LS  ++ AC + C  P
Sbjct: 656 SNSIFSESSLSSPIIEEPKTLIDCLKNFTHVEELSGENMFACENCCNQP 704


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -2

Query: 526 DFNSTLEILVGIERAWKKEVF-SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSL-SRTS 353
           D   + E  +G + +W    F S P+P    G+T D+ +  PG+   +++F  +  ++  
Sbjct: 670 DVEPSTEQNIGGDVSWGASTFQSKPQPSFSFGLTLDDKSNTPGK--NFSIFGKTAETQVE 727

Query: 352 TRSPRVN--TKP 323
            + P  N  TKP
Sbjct: 728 QKKPENNVLTKP 739


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,679
Number of Sequences: 5004
Number of extensions: 70150
Number of successful extensions: 209
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)