Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021756
         (758 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        139   3e-33
SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)          31   0.77 
SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)                     31   1.3  
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        30   1.8  
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 30   2.3  
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)                      29   3.1  
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)                       29   4.1  
SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              29   4.1  
SB_27733| Best HMM Match : Filamin (HMM E-Value=0.22)                  29   4.1  
SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)               28   7.2  
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            28   7.2  
SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)               28   9.5  
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  139 bits (336), Expect = 3e-33
 Identities = 64/94 (68%), Positives = 77/94 (81%)
 Frame = +3

Query: 231 GKKHNDAQAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGA 410
           GK     +AI+ HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR  ++ENKV APA+ G 
Sbjct: 38  GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGV 97

Query: 411 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 512
           IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI+R
Sbjct: 98  IAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIAR 131



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 34/45 (75%), Positives = 37/45 (82%)
 Frame = +1

Query: 121 QLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTMMRK 255
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RK
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRK 45



 Score = 33.1 bits (72), Expect = 0.25
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +2

Query: 494 PYQDFKGTIEIINDVHILKPGDKVGA 571
           P +  +GTIEIINDVH++K  +K+ A
Sbjct: 126 PTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)
          Length = 230

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 615 ENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPLKSW 499
           +N E  + LRRV +E+ T  P    CTSLM +I  +K W
Sbjct: 90  KNAETIDALRRVIAESYTPRP----CTSLMNAIFDIKEW 124


>SB_33085| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 537

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = +1

Query: 208 RGSSIVLMGKNTMMRKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSL 354
           RGS   ++G   M  KP +TT TT +P+      +RATL   + AE ++
Sbjct: 252 RGSVTSIVGVIDMKFKPYRTTLTTGKPNPVALGNARATLYCSATAEPAV 300


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -1

Query: 488 KSLEERGLLWTEAGVVGGNDD*QWG 414
           K+LEERGLL+  +GV GG +  ++G
Sbjct: 160 KALEERGLLFVGSGVSGGEEGARYG 184


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 574 RSSNLVTGLQDVYIVDDFNSTLEILVGIER 485
           R  NLVT L DVYI  ++ S L+I   +E+
Sbjct: 295 RDKNLVTNLSDVYIGSNYRSILDIERRVEQ 324


>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
          Length = 1776

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 160  ADNVGSQQMQQIRFSLRGSSIVLMGKNTMMRKPSKTT 270
            + +VGS + QQ+R  +  SS V  G+N  +R P K+T
Sbjct: 1309 SSHVGSGRNQQVRKHVEVSSHVGSGRNQQVRHPLKST 1345


>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
          Length = 853

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -2

Query: 601 VQHVEKGGFRSSNLVTGLQDVYIVDDFNSTLEILVGIERAWKKEVF 464
           V++ EK GF   +L+  L D+Y+  + +     +   +R+++KE+F
Sbjct: 719 VKNPEKYGFEPKSLLDRLTDIYVHLNTDEFATAVASDQRSYRKELF 764


>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = +3

Query: 213 LQYRAHGKKHNDAQAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKV 386
           ++ R+HG +      +    +N   LEK+L       G + T    VE  +K +E K+
Sbjct: 25  MELRSHGFQCTSIPVLSFEFENLDKLEKMLSEPTEYGGIILTSARGVEAMEKCIEEKI 82


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 442 WAGMTTDNGAMAPGRAGAWTLFSNSL 365
           W+  T D     PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619


>SB_27733| Best HMM Match : Filamin (HMM E-Value=0.22)
          Length = 278

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
 Frame = +3

Query: 405 GAIAPLSVVIPAHNTGLGPEKT-----SFFQALSIPTKISRVLLKSSTMYTS-*SPVTRL 566
           G + PL+VVI  ++ G G E T       +  LS+    +RV  + S  Y S  S V  +
Sbjct: 93  GPVIPLNVVIQFYDDGYGYEFTYTPPDDGYYKLSVTVNGARV--RGSPCYWSVRSKVDLV 150

Query: 567 ELLKPPFSTC*TSLHSHMVLLLSRYMILELFLHLK 671
           ++ K P +    S+ SH+ L   R  +LE  L L+
Sbjct: 151 KMFKEPANNHLKSIGSHVAL---RVQLLEASLELE 182


>SB_10357| Best HMM Match : zf-C2H2 (HMM E-Value=9.8e-38)
          Length = 509

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 379 FSNSLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSR 269
           FS+S + T         KP    +CG SFS++G LSR
Sbjct: 464 FSDSSTLTKRLRTHTGEKPYQCRICGMSFSQSGNLSR 500


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +2

Query: 563 VGASEATLLNMLNISPFSYGLVVKQVYD---SGTIFAP-EILDIKPEDLRAKFQAGVANV 730
           +  S +  + +L +SP  YG+    +     +G +F    IL + PE + +   A VA  
Sbjct: 82  IAGSSSVYIGLLGLSPAQYGITFAAIVSALIAGALFTQRRILQLGPEKIVSIGAALVATG 141

Query: 731 AALSLAI 751
           A  +LAI
Sbjct: 142 ALTTLAI 148


>SB_53781| Best HMM Match : Keratin_B2 (HMM E-Value=0.16)
          Length = 561

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/73 (26%), Positives = 26/73 (35%)
 Frame = +1

Query: 142 KCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTMMRKPSKTTWTTIQPSRNCCHTSRAT 321
           +C  V A        + + F LR  S  +MG  T M K    T        NCC  +   
Sbjct: 465 RCMTVKAIGKNPSNGEPMSFELRNCSSSMMGMCTNMCKMMNDTGALTSCEVNCCEGNGCN 524

Query: 322 LASCSPAETSLRS 360
            A       ++RS
Sbjct: 525 NAGLPTTMPTVRS 537


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 258 IKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 350
           +K HLDN P L K LP + G +  + + GDL
Sbjct: 176 LKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205


>SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/73 (26%), Positives = 27/73 (36%)
 Frame = +1

Query: 163 DNVGSQQMQQIRFSLRGSSIVLMGKNTMMRKPSKTTWTTIQPSRNCCHTSRATLASCSPA 342
           D +G QQ +  +  L      L+G   + R+  +    T   SR C    +    SCS  
Sbjct: 1   DGIGQQQPKLYKLVLPNFGFQLIGYPGIYRQTGRGEEVTWHGSRTCTLHRKLAGVSCSCC 60

Query: 343 ETSLRSVTNCWRT 381
             SL      W T
Sbjct: 61  GNSLLHTHFTWTT 73


>SB_27097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 606 LHSHMVLLLSRYMILELFLHLKFWTSNQKIS 698
           L S +++++ RY+ +   LH + W S +K+S
Sbjct: 145 LLSMLLMMVDRYIAIAWGLHYRIWKSQRKVS 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,437,467
Number of Sequences: 59808
Number of extensions: 558013
Number of successful extensions: 1529
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)