Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021756
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 107 1e-23
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 103 1e-22
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 103 1e-22
At1g58220.1 68414.m06612 myb family transcription factor contain... 34 0.12
At3g50610.1 68416.m05534 hypothetical protein 31 0.83
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 2.5
At5g39830.2 68418.m04825 DegP protease, putative contains simila... 29 4.4
At5g39830.1 68418.m04824 DegP protease, putative contains simila... 29 4.4
At5g01730.1 68418.m00091 expressed protein 28 5.9
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 28 7.7
At3g56700.1 68416.m06307 male sterility protein, putative simila... 28 7.7
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con... 28 7.7
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein... 28 7.7
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 107 bits (256), Expect = 1e-23
Identities = 50/83 (60%), Positives = 64/83 (77%)
Frame = +2
Query: 509 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 688
KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F PE+L++
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTE 211
Query: 689 EDLRAKFQAGVANVAALSLAIGY 757
+DL KF AGV+ + ALSLAI Y
Sbjct: 212 DDLVEKFAAGVSMITALSLAISY 234
Score = 96.7 bits (230), Expect = 1e-20
Identities = 47/96 (48%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
Frame = +3
Query: 231 GKKHNDAQAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 404
GK ++++ H D N A LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 57 GKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 116
Query: 405 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 512
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 117 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 69.7 bits (163), Expect = 2e-12
Identities = 34/58 (58%), Positives = 42/58 (72%)
Frame = +1
Query: 82 KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTMMRK 255
KA K Y K+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM++
Sbjct: 7 KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKR 64
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 103 bits (248), Expect = 1e-22
Identities = 46/83 (55%), Positives = 64/83 (77%)
Frame = +2
Query: 509 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 688
KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTE 210
Query: 689 EDLRAKFQAGVANVAALSLAIGY 757
+ L KF +G++ V +L+LA+ Y
Sbjct: 211 DQLVEKFASGISMVTSLALAVSY 233
Score = 97.9 bits (233), Expect = 6e-21
Identities = 47/96 (48%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Frame = +3
Query: 231 GKKHNDAQAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 404
GK ++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 405 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 512
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +1
Query: 67 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTM 246
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 247 MRK 255
M++
Sbjct: 61 MKR 63
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 103 bits (248), Expect = 1e-22
Identities = 46/83 (55%), Positives = 64/83 (77%)
Frame = +2
Query: 509 KGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKP 688
KGT+EII V ++K GDKVG+SEA LL L I PFSYGLVV+ VYD+G++F+PE+LD+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTE 210
Query: 689 EDLRAKFQAGVANVAALSLAIGY 757
+ L KF +G++ V +L+LA+ Y
Sbjct: 211 DQLVEKFASGISMVTSLALAVSY 233
Score = 97.9 bits (233), Expect = 6e-21
Identities = 47/96 (48%), Positives = 68/96 (70%), Gaps = 2/96 (2%)
Frame = +3
Query: 231 GKKHNDAQAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARP 404
GK ++++ H +N N A+ LLP ++GNVG +FT+GDL EV +++ + KV APAR
Sbjct: 56 GKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115
Query: 405 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISR 512
G +AP+ VV+ NTGL P +TSFFQ L+IPTKI++
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/63 (55%), Positives = 44/63 (69%)
Frame = +1
Query: 67 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRFSLRGSSIVLMGKNTM 246
M + KA K Y K+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 247 MRK 255
M++
Sbjct: 61 MKR 63
>At1g58220.1 68414.m06612 myb family transcription factor contains
Pfam profile: PF00249: Myb-like DNA-binding domain
Length = 834
Score = 33.9 bits (74), Expect = 0.12
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Frame = -2
Query: 556 TGLQDVYIVDDFNSTLEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLF 377
TGLQ N L + VG R K++ G P+L +G T GA A G + TL
Sbjct: 255 TGLQRTEAQMAANRALSLAVG-NRLPSKKLAVGMTPMLSSG--TIKGAQANGASSGSTLQ 311
Query: 376 SN--------SLSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMACAS 245
+LSR +T P ++ + GNS SRA L+ + +A A+
Sbjct: 312 GQQQPQPQIQALSRATTSVPVAKSRVPVKKTTGNSTSRADLMVTANSVAAAA 363
>At3g50610.1 68416.m05534 hypothetical protein
Length = 229
Score = 31.1 bits (67), Expect = 0.83
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Frame = +3
Query: 222 RAHGKKHNDAQAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLENKVQAPA 398
+ + + H A D + +P + H KGNV + D KLL+ VQ
Sbjct: 17 KTNDQDHFKAGFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHF 76
Query: 399 RPGAIAPLSVVIPAHNTGLGPEK 467
+ G+ + P H+ G+G +K
Sbjct: 77 KTGSTDDFAPTSPGHSPGVGHKK 99
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 276 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 374
N P ++K PHI VGF+ T+GD+ + D L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815
>At5g39830.2 68418.m04825 DegP protease, putative contains
similarity to DegP protease precursor GI:2565436 from
[Arabidopsis thaliana]
Length = 434
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -2
Query: 574 RSSNLVTGLQDVYIVDDFNSTLEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRA 395
+S++L G Q + I + F + VG+ +++FS + G+ TD A+ PG +
Sbjct: 234 QSNSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQTGVTIGGGIQTD-AAINPGNS 292
Query: 394 G 392
G
Sbjct: 293 G 293
>At5g39830.1 68418.m04824 DegP protease, putative contains
similarity to DegP protease precursor GI:2565436 from
[Arabidopsis thaliana]
Length = 448
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -2
Query: 574 RSSNLVTGLQDVYIVDDFNSTLEILVGIERAWKKEVFSGPRPVLWAGMTTDNGAMAPGRA 395
+S++L G Q + I + F + VG+ +++FS + G+ TD A+ PG +
Sbjct: 234 QSNSLKVGQQCLAIGNPFGFDHTLTVGVISGLNRDIFSQTGVTIGGGIQTD-AAINPGNS 292
Query: 394 G 392
G
Sbjct: 293 G 293
>At5g01730.1 68418.m00091 expressed protein
Length = 1192
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +3
Query: 447 TGLGPEKTSFFQALSIPTKISRVLLKSSTMYTS*SPVTRLELLKPPFSTC*TSLHSHM 620
TG +TS + S PT+ V ++SS + S +T +E L P+ TSL+ H+
Sbjct: 822 TGSANSRTSSDE--SPPTQNGSVGVQSSPLDVFPSSITEIEALHAPYQEIFTSLNDHI 877
>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 666
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = -2
Query: 427 TDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLP 314
T+NGA G A S SLS S SP VN + LP
Sbjct: 205 TENGAWNEGLAQYDASSSLSLSMPSQNSPNVNNQSGLP 242
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 286 PSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSK 390
P R HT+R SC ETS +VT+ K++
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSLVTPKTE 67
>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase BGQ60 precursor GB:A57512
[Hordeum vulgare]; similar to beta-mannosidase enzyme
(GI:17226270) [Lycopersicon esculentum]
Length = 512
Score = 27.9 bits (59), Expect = 7.7
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 2/110 (1%)
Frame = -2
Query: 652 SRIIYLLNNKTI*EWRDVQHVEKGGFRSSNLVTGLQDVYIVDDFNSTLEILVGI--ERAW 479
+R+I + K I + ++ H + N GL +V DF E +R
Sbjct: 140 NRLIDYMVQKGITPYANLYHYDLP-LALENKYKGLLGRQVVKDFADYAEFCYKTFGDRVK 198
Query: 478 KKEVFSGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNT 329
F+ PR V A + DNG APGR F N S P + T
Sbjct: 199 NWMTFNEPRVV--AALGYDNGIFAPGRCS--KAFGNCTEGNSATEPYIVT 244
>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
protein-related similar to ATP-dependent Clp protease,
ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
putida KT2440]; similar to ClpB protein
(SP:Q9RA63){Thermus thermophilus}
Length = 422
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = -1
Query: 443 VGGNDD*QWGNGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQ 297
+G + + +G+ T + +LQ + +S+GE E +D W Q
Sbjct: 329 IGSHFERCFGSETHLELDKEVILQILAASWSSLSSGEEEGRTIVDQWMQ 377
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,772,741
Number of Sequences: 28952
Number of extensions: 388840
Number of successful extensions: 1178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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