Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021755
(712 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 68 2e-12
SPCC338.04 |cid2||caffeine induced death protein Cid2|Schizosacc... 29 0.66
SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 29 0.87
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 27 3.5
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 4.6
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 26 4.6
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 26 6.1
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 25 8.1
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 67.7 bits (158), Expect = 2e-12
Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +3
Query: 255 LNSLNIQDGSKLFLKDLGPQVSWRNVFLAEYAGPLFVYL-WVYQRPWILYGTQTSSPEQV 431
L + G+ +++KDLGPQ+ WR VF+ EY GPL ++L ++ WI Q
Sbjct: 61 LRKYGVGPGATIWVKDLGPQIGWRTVFMIEYLGPLVIHLFFILNYKWIYRKDYNLCLNQ- 119
Query: 432 ATVAAICWSAHYAKRLFETLFIHRFSM 512
+A + H+ KR +E++F+HRFS+
Sbjct: 120 -KIAFVLVMLHFMKREYESIFVHRFSL 145
Score = 50.4 bits (115), Expect = 2e-07
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Frame = +2
Query: 488 FVHSSLFHGTMPLKNLFRNCAYYWLFA-LYVAYHVNHPL----YTAPCTTCYYIGLGGFV 652
FVH TMPL+N+F+NCA+Y L + L++AY + P Y P + I G+
Sbjct: 139 FVHRFSL-ATMPLRNIFKNCAHYHLLSGLFLAYFIYGPWHANDYIKPNHLLFLI--VGWA 195
Query: 653 LCELGNLSIHILLKNLRPA 709
L N HI+L++LRPA
Sbjct: 196 FAVLSNFRTHIILRDLRPA 214
>SPCC338.04 |cid2||caffeine induced death protein
Cid2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 167
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Frame = +1
Query: 88 LSVSSAK---PLGKIHVTGESSIKNVKEKI 168
LS++SAK P GK+H T E +NVK+K+
Sbjct: 31 LSLNSAKWEYPEGKVHETQEERCQNVKKKL 60
>SPCC1919.07 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 206
Score = 28.7 bits (61), Expect = 0.87
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 106 KPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTLKDED 252
KP K E KN E + + YP ++LK G T++DE+
Sbjct: 27 KPRKKNLGNNEWRFKNAGEYFDEDNNEEEYPSLESLKTVGNGDTIQDEE 75
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 26.6 bits (56), Expect = 3.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +1
Query: 580 LSCEPSPIHCSLYYLLLHRTWRFCSLRIRKPEHSHTFEE 696
L+ E +P + SL + + ++ C L +KPE+S T E+
Sbjct: 769 LALEKNPENPSLLFNVAFVQFQLCELIRQKPENSRTVED 807
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = +1
Query: 61 DKHNMEIEILSVSSAKPLGKIHVTGESSIKNVKEKIQQSVKKSLYPDRQALKLEAKGKTL 240
+K N+ I+ L+ + K L K V ESS+K+ ++ Q +K+ + + E +TL
Sbjct: 495 EKANIVIDELNSAKLK-LSK-QVEEESSMKDDLTEMNQRLKEQIESYENEVNSEITSRTL 552
Query: 241 KDEDT 255
K+ +T
Sbjct: 553 KEFET 557
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 365 LLVGVSKTVDFIWYTNVKS*ASSYSCSNMLVS 460
L + K+ DF WYT + ++ YS S + +S
Sbjct: 168 LYLAQDKSADFQWYTKRAAISAIYSASELFMS 199
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -1
Query: 550 CTVSEQVLQWHRT--MEKR*MNKVSNNLLA*CADQHIAATVATCSGLDVCV 404
C S+QV+++ R + + K++ NL+ C T C + VC+
Sbjct: 235 CKTSQQVIEFVRRGIVAGTSLEKIAENLMDNCIASDTETTGLGCDNMTVCI 285
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 8.1
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Frame = +1
Query: 85 ILSVSS--AKPLGKIHVTGESSIKNVKEKIQQSVKKSLYP--DRQALKLEAKGKTLKDED 252
ILSV S AK + T +SS K +E+ + +S+YP + ++ +E GK+L+D D
Sbjct: 362 ILSVVSFLAKMVPPSSFTQKSSAK--EEESDKVKGESVYPKPESESYDVEMNGKSLEDSD 419
Query: 253 T 255
+
Sbjct: 420 S 420
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,970
Number of Sequences: 5004
Number of extensions: 67085
Number of successful extensions: 190
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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