Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021755
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271... 87 1e-17
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 30 2.1
07_01_0442 - 3348638-3349126,3349978-3350322 29 3.6
05_05_0121 + 22525782-22525998,22526526-22526609,22526797-225268... 29 3.6
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 29 3.6
01_06_1275 - 35910992-35911342,35912157-35912390,35912573-359126... 29 3.6
09_04_0484 + 17990020-17990488,17990930-17991009,17991122-179915... 29 4.8
09_04_0483 + 17979566-17980019,17980242-17980321,17980431-179808... 28 6.4
06_01_0240 - 1822086-1822216,1822311-1822367,1822788-1822842,182... 28 8.4
>01_01_0335 -
2706916-2706984,2707062-2707825,2710014-2710053,
2710105-2710173,2710268-2710336
Length = 336
Score = 87.4 bits (207), Expect = 1e-17
Identities = 38/72 (52%), Positives = 46/72 (63%)
Frame = +2
Query: 488 FVHSSLFHGTMPLKNLFRNCAYYWLFALYVAYHVNHPLYTAPCTTCYYIGLGGFVLCELG 667
FVH H T P+ N+FRNCAYYW F Y+AY+ NHPLYT IG G +LC++
Sbjct: 174 FVHR-FSHATSPVSNVFRNCAYYWTFGAYIAYYCNHPLYTPVSELQMKIGFGFGILCQIA 232
Query: 668 NLSIHILLKNLR 703
N HILL+NLR
Sbjct: 233 NFYCHILLRNLR 244
Score = 64.1 bits (149), Expect = 1e-10
Identities = 34/75 (45%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Frame = +3
Query: 297 KDLGPQVSWRNVFLAEYAGPLFVYLWVYQRPWILY----GTQTSSPEQVATVAAICWSAH 464
KDLGPQV + +F EY GPL +Y Y P Y G + P V T A W H
Sbjct: 107 KDLGPQVFYSTLFFFEYLGPLLIYPMFYYLPVYKYFGYEGERVMHP--VQTYAMYYWCFH 164
Query: 465 YAKRLFETLFIHRFS 509
Y KR+ ET F+HRFS
Sbjct: 165 YFKRIMETFFVHRFS 179
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 587 HDKPHRGQTTNNMHSF*TSSSMASYHGKAMNEQS 486
HDKP RG+TT+ S +S +S+H +A +++
Sbjct: 81 HDKPSRGETTSISWSGNSSYLASSFHPRATEDET 114
>07_01_0442 - 3348638-3349126,3349978-3350322
Length = 277
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 432 ATVAAICWSAHYAKRLFETLFIHRFS 509
A V + + H+ KR+ E LFIH++S
Sbjct: 98 AQVLSAALTVHFLKRILEVLFIHQYS 123
>05_05_0121 +
22525782-22525998,22526526-22526609,22526797-22526820,
22527118-22527233,22527691-22527936,22528176-22528256,
22528666-22528782,22529139-22529492
Length = 412
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 408 QTSSPEQVATVAAICWSAHYAKRLFETLFIHRF 506
Q++SPE + + +CW+ H A R +T+ + F
Sbjct: 318 QSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTF 350
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -2
Query: 408 VYHIKSTVFDTPTSKQRVVQHIQLKTHSAKILEVQDLLKKAWIRL 274
V HIK TV P+ QRV H + K +E + KAW+ L
Sbjct: 264 VAHIKFTVLLLPSGSQRVTSHSLQELQPTKSIE-DNAEIKAWLAL 307
>01_06_1275 -
35910992-35911342,35912157-35912390,35912573-35912653,
35913162-35913407,35913502-35913617,35914813-35915032
Length = 415
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 408 QTSSPEQVATVAAICWSAHYAKRLFETLFIHRF 506
Q++SPE + + +CW+ H A R +T+ + F
Sbjct: 322 QSASPEYLQKLTYLCWNHHKAVRHIDTVRAYTF 354
>09_04_0484 +
17990020-17990488,17990930-17991009,17991122-17991586,
17994670-17994756,17994887-17995018,17995102-17995293,
17995409-17995495,17995621-17996295
Length = 728
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/18 (61%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = +2
Query: 530 NLFRNCAYYWL-FALYVA 580
N++R+ YYWL FA+YVA
Sbjct: 438 NMYRDLGYYWLRFAIYVA 455
>09_04_0483 +
17979566-17980019,17980242-17980321,17980431-17980895,
17981460-17981597,17982574-17982660,17982781-17982909,
17983034-17983225,17983393-17983479,17983707-17984378
Length = 767
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/18 (55%), Positives = 15/18 (83%), Gaps = 1/18 (5%)
Frame = +2
Query: 530 NLFRNCAYYWL-FALYVA 580
N++R+ YYWL FA+Y+A
Sbjct: 478 NMYRDLGYYWLRFAIYIA 495
>06_01_0240 -
1822086-1822216,1822311-1822367,1822788-1822842,
1824585-1824674,1824848-1824995,1825095-1825351
Length = 245
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 180 EEISIPRSSGPQTGG*RQNVER*RYLN-SLNIQDGSKLFLKD 302
E + P S + G RQ+V YL+ S+ +QDG KL++ D
Sbjct: 170 ESLLKPILSADEVSGMRQSVNILIYLDVSMALQDGMKLYISD 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,937,104
Number of Sequences: 37544
Number of extensions: 402873
Number of successful extensions: 961
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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