Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021755
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45931| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_23534| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_25619| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)                   28   8.6  

>SB_45931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 17/29 (58%), Positives = 22/29 (75%)
 Frame = +3

Query: 333 FLAEYAGPLFVYLWVYQRPWILYGTQTSS 419
           F+AEYAGPL VYL++Y RP  +YG   +S
Sbjct: 2   FMAEYAGPLAVYLFLYARPSFIYGADAAS 30


>SB_23534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +2

Query: 350 WTTLCLLVGVSKTVDFIWYTNVKS*ASSYSCSNMLVSTLCQKVV*NFVHSSLFHGTMPLK 529
           W+ + L +G  K VDF +  N+     + +CS      +C+K +  ++  +  H   P  
Sbjct: 57  WSAVTLRIGEKKGVDFDYIINLNHTTINSTCS------VCEKSI--YLPGTEIHEHSPAA 108

Query: 530 NLFRNCAYYW 559
            L R   Y+W
Sbjct: 109 MLQREKFYFW 118


>SB_35703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 616 YYLLLHRTWRFCSLRI 663
           Y L LHR WR C LR+
Sbjct: 723 YLLTLHRLWRSCDLRL 738


>SB_25619| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1038

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 511 WYDAIEELVQKLCILLVVCPLCGLSCEPSPIHCSLYYLLLHRTWRFCSLRIRKP 672
           W++ I++ ++KLC     C L      P PI       +    W+FCS  +  P
Sbjct: 832 WWEGIDKDIEKLCKSCQSCQLVSSYDRPVPIATK---EMPTSPWKFCSTDLLGP 882


>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
          Length = 984

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 511 WYDAIEELVQKLCILLVVCPLCGLSCEPSPIHCSLYYLLLHRTWRFCSLRIRKP 672
           W++ I++ ++KLC     C L      P PI  +    +    W+FCS  +  P
Sbjct: 771 WWEGIDKDIEKLCRSCQSCHLVSSYDRPVPIATT---EMPTSPWKFCSTDLLGP 821


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,243,891
Number of Sequences: 59808
Number of extensions: 492395
Number of successful extensions: 1088
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)