Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021754
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    31   0.16 
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    28   1.1  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   2.0  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    27   3.4  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.9  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    25   7.9  

>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 34  FHINIFMGFYYFSITNYYERSY-SLLREWYTRFVNKQF-RREPSSRQAGRRHYASST 198
           F  ++F  FY F  T Y  RSY +L+++ Y + +  +F + +    + GR +   ST
Sbjct: 346 FLTSLFTQFYLFMSTRYLARSYTTLVQQIYNKVIRSRFVQNKSGDSKVGRSNNLIST 402


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 27  VVFSYQYFYGILLLFYYELLRTIILVVARVVYPFCEQTI 143
           V+F +  FYG+  +   ELL+  +    RVV+ FCE  I
Sbjct: 560 VLFLFACFYGLDYILCAELLQAFL----RVVFTFCEHII 594


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 14  HAHTGCFFISIFLWDFTTFLLRTITNDHTRCCAS 115
           H  +G    S+ +WD +TF +  +   HTR   S
Sbjct: 38  HLASGLVNGSVVIWDLSTFSVSRVLTGHTRAIQS 71


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 618 HPNLSFQLNVTVSEILLLIRW 680
           H   SF +N+TV E LLL  W
Sbjct: 447 HKKNSFSINMTVHESLLLFTW 467


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 539 PMPFKNLRFHNFCSTFSFIPAVALH*TPQFI 631
           P+P KN    + C  FS  P +A    P F+
Sbjct: 704 PIPIKNNEDSDSCKAFSQAPPIATKKPPTFL 734


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/47 (19%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 10  CTRTHRLFFHINI-FMGFYYFSITNYYERSYSLLREWYTRFVNKQFR 147
           C + +  F+++   F+G Y +  +NY+     L  ++   +++  F+
Sbjct: 156 CEQGYSFFYYLCFWFLGLYIYRSSNYWSNEEKLFEDYPQYYMSPLFK 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,918
Number of Sequences: 5004
Number of extensions: 50195
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)