Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021754
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0399 - 8569478-8569795,8570219-8570287,8570760-8570848,857...    29   4.7  
03_05_0149 - 21278418-21278747,21279170-21279238,21279709-212797...    29   4.7  
08_02_0379 - 16506775-16506950,16507037-16507096,16507187-165073...    28   8.2  

>09_02_0399 -
           8569478-8569795,8570219-8570287,8570760-8570848,
           8571446-8571542,8571920-8571991
          Length = 214

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +2

Query: 71  LLRTITNDHTRCCASGIPVL*TNNLEENRRVVRPAAAITRRPPVMFLRLCSL*EASDGLA 250
           +L +ITN    CC S  PV  ++++   RR+  P        P   LRLC L + +D LA
Sbjct: 89  ILESITNGFHLCCRSFEPVA-SSDVHPRRRIQLP------WHPGKILRLCHLIKGADHLA 141


>03_05_0149 -
           21278418-21278747,21279170-21279238,21279709-21279797,
           21280395-21280467,21280846-21280917
          Length = 210

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 21/60 (35%), Positives = 30/60 (50%)
 Frame = +2

Query: 71  LLRTITNDHTRCCASGIPVL*TNNLEENRRVVRPAAAITRRPPVMFLRLCSL*EASDGLA 250
           +L +ITN    CC S  PV  ++++   RR+  P        P   LRLC L + +D LA
Sbjct: 81  ILESITNGFHLCCRSFEPVA-SSDVHPRRRIQLP------WHPGKILRLCHLIKGADHLA 133


>08_02_0379 -
           16506775-16506950,16507037-16507096,16507187-16507375,
           16508131-16508224,16508276-16508300,16508690-16508796,
           16508903-16509021,16510520-16510658
          Length = 302

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 55  GFYYFSITNYYERSYSLLREWYTRFVNKQFRREPSSRQAG 174
           G  YF   N Y+  + +L  WY+  ++K +R +  +   G
Sbjct: 98  GGIYFKKKNVYDLHHGILGIWYSHILSKLYRNKNFNNVTG 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,064,042
Number of Sequences: 37544
Number of extensions: 393459
Number of successful extensions: 1027
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)