Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021754
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42265| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_42265| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = -2

Query: 291 LHASSTTLRLAGPSANPSLASYRLHNLRNMTGGRRVMAAAGLTTRRFSSK 142
           LH+S+ T    GPSA+ S  S    + R    GR  +    L+ + FS +
Sbjct: 101 LHSSANTASTDGPSADTSSQSGAASHERQAAPGRMDVIRRSLSAKEFSDE 150


>SB_14689| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1900

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 258  GPSANPSLASYRLHNLRNMTGGRRVMAAAGLTTRRFSS 145
            G  A+PS  + RL +LR+  G +R  +   LTT++ +S
Sbjct: 1341 GKKADPSEVATRLKSLRSDDGRKRFASEEWLTTQQITS 1378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,061,257
Number of Sequences: 59808
Number of extensions: 401016
Number of successful extensions: 1036
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)