Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021754
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g51090.1 68414.m05744 heavy-metal-associated domain-containin...    31   0.73 
At1g52440.1 68414.m05920 hypothetical protein                          30   1.7  
At3g43740.2 68416.m04673 leucine-rich repeat family protein cont...    28   5.2  
At3g22415.1 68416.m02828 expressed protein                             28   6.8  
At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein / b...    27   9.0  

>At1g51090.1 68414.m05744 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 171

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +3

Query: 369 APGPSQDQLPNIVRPVPTPV 428
           AP P+Q Q P +VRP P PV
Sbjct: 95  APAPAQAQAPALVRPAPVPV 114


>At1g52440.1 68414.m05920 hypothetical protein
          Length = 209

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 147 KRTVESSGRPPPLRVVHQSCFLDYAACKKPATGWQMD 257
           KR++ES+    P R   QS F+ +  CK     +Q D
Sbjct: 113 KRSIESASHGAPARAASQSIFITHGICKSNRLLFQCD 149


>At3g43740.2 68416.m04673 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to somatic
           embryogenesis receptor-like kinase 2 [Arabidopsis
           thaliana] gi|14573457|gb|AAK68073
          Length = 248

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 42  QYFYGILLLFYYELLRTIILVVARVVYPF 128
           QY YGI+ L  ++ L+T  L V  + + F
Sbjct: 97  QYLYGIITLLPFDYLKTFTLSVTHITFCF 125


>At3g22415.1 68416.m02828 expressed protein
          Length = 67

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
 Frame = +1

Query: 46  IFMGFYYFSITNYY-----ERSYSLLREWYTRFVNKQFRREPSSRQA---GRRHYASSTS 201
           +F G Y +S+T+       ++S SLL  W+  F+++ F  E  +++    G  H +  + 
Sbjct: 3   MFCGLYLWSLTHTLCKSNNDKSISLLSFWFRGFIHRMFMLEVKTKKIILNGMIHISVFSP 62

Query: 202 HV 207
           HV
Sbjct: 63  HV 64


>At1g52400.1 68414.m05913 glycosyl hydrolase family 1 protein /
           beta-glucosidase, putative (BG1) contains Pfam PF00232 :
           Glycosyl hydrolase family 1 domain; TIGRFAM TIGR01233:
           6-phospho-beta-galactosidase; identical to GI:6651430
           from [Arabidopsis thaliana]
          Length = 528

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 55  GFYYFSITNYYERSYSLLREWYTRFVNKQF 144
           G YY    N   R   +  +WY+ F+  QF
Sbjct: 490 GLYYIDFQNNLTRHQKVSGKWYSEFLKPQF 519


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,399,665
Number of Sequences: 28952
Number of extensions: 278098
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)