Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021752
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    25   0.44 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    25   0.44 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    25   0.44 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    25   0.44 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    25   0.44 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    25   0.44 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           25   0.44 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    25   0.44 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    25   0.44 
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    23   1.8  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.6  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 275 YSFPVPFHGSEPPSQTYPCLAPSRI 201
           Y+ P P HG +P    Y  L P R+
Sbjct: 57  YAAPAPGHGLQPTMGDYTQLQPQRL 81


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 275 YSFPVPFHGSEPPSQTYPCLAPSRI 201
           Y+ P P HG +P    Y  L P R+
Sbjct: 57  YAAPAPGHGLQPTMGDYTQLQPQRL 81


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 275 YSFPVPFHGSEPPSQTYPCLAPSRI 201
           Y+ P P HG +P    Y  L P R+
Sbjct: 57  YAAPAPGHGLQPTMGDYTQLQPQRL 81


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 275 YSFPVPFHGSEPPSQTYPCLAPSRI 201
           Y+ P P HG +P    Y  L P R+
Sbjct: 57  YAAPAPGHGLQPTMGDYTQLQPQRL 81


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 275 YSFPVPFHGSEPPSQTYPCLAPSRI 201
           Y+ P P HG +P    Y  L P R+
Sbjct: 57  YAAPAPGHGLQPTMGDYTQLQPQRL 81


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 275 YSFPVPFHGSEPPSQTYPCLAPSRI 201
           Y+ P P HG +P    Y  L P R+
Sbjct: 13  YAAPAPGHGLQPTMGDYTQLQPQRL 37


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 275 YSFPVPFHGSEPPSQTYPCLAPSRI 201
           Y+ P P HG +P    Y  L P R+
Sbjct: 57  YAAPAPGHGLQPTMGDYTQLQPQRL 81


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 275 YSFPVPFHGSEPPSQTYPCLAPSRI 201
           Y+ P P HG +P    Y  L P R+
Sbjct: 57  YAAPAPGHGLQPTMGDYTQLQPQRL 81


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 275 YSFPVPFHGSEPPSQTYPCLAPSRI 201
           Y+ P P HG +P    Y  L P R+
Sbjct: 57  YAAPAPGHGLQPTMGDYTQLQPQRL 81


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 147 AMSRSSASDIDAELGPPVLSC 85
           ++ RSS+    A  GPP++ C
Sbjct: 87  SLXRSSSPQTSAPTGPPIVRC 107


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 535 YPRADTISARRTW 497
           +P+ D++ A RTW
Sbjct: 270 FPKLDSLVASRTW 282


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,867
Number of Sequences: 336
Number of extensions: 3302
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)