Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021751
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p... 28 1.6
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 27 2.1
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 4.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.9
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 26 4.9
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At... 26 6.5
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 6.5
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.6
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 25 8.6
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce... 25 8.6
>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 226
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 420 FMNVVPNLLILVPIFLFALLHAASYSLTILI 512
F+ V+PN+ +L+P F+ + + Y L +I
Sbjct: 103 FLTVIPNIAVLIPCFIAYKITDSHYLLVAII 133
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 115 QQAGDTGPPKGIPALKAHIIANKID 189
Q+ G GP KG A+K H I +ID
Sbjct: 330 QRLGADGPEKGYDAIKKHRIYRRID 354
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +3
Query: 15 SVSRFYLLFHSILYNFSCSSTNFNTLNQYG 104
S++ F+L F+ F C++T++++LN YG
Sbjct: 611 SMANFFLAFY-----FVCNATSYSSLNPYG 635
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Frame = -3
Query: 643 QRHDEYDREQHDLGERRGPEDVPRLELDQGDEQTSHPQRILT-------KSIRIVKEYEA 485
++ YD HD + + + DQ +QT+ Q +L+ K I I+K+ +
Sbjct: 103 EKSSSYDTVLHDCSSLKSVNEALKQAQDQNLKQTAQLQNLLSDKEKEVEKKITIIKDLKD 162
Query: 484 ACSSANKKI 458
A +S+ ++
Sbjct: 163 ALASSTHQV 171
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 348 SLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLL 446
S S++ +A FF+ D YLFY+L F+ VP ++
Sbjct: 437 SPSKEILA-FFI-DQTWYLFYALFFICNVPRVI 467
>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 6.5
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +3
Query: 153 SLESSHHCQ*NRRSSLGGPRNHRAVYHWI-RVPVVNNPVSAFYKALLANAATSALRLHQR 329
+L+ S+ R SS GPR + + R+P+VN+P+ + +K N + + + H
Sbjct: 414 TLDISNTPNLRRFSSSFGPRERKESFSSRNRLPLVNHPIRSIFK---HNVSENPITDHSE 470
Query: 330 IPAREISL-SRDFMARF--FLEDSAHYL 404
+ S+D ++ F L+ AH+L
Sbjct: 471 HAVYDSEFASKDDLSGFIQLLDSHAHHL 498
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 189 RSSLGGPRNHRAVYHWIR 242
R LG R HRA HWI+
Sbjct: 363 RDLLGDERVHRAAMHWIK 380
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 299 GDFSAAATSKNSSTRDLPLAGFHGEVLPGGQRALSILFTHFHERRAQFVNIGANLFICAA 478
G FS+ A+ + DL L F LP R++++L +HF + + +I AN+ I
Sbjct: 29 GSFSSVASVSLKRSGDLLL--FERFTLPARTRSVALLSSHFLQSESGRHSI-ANILIATE 85
Query: 479 T-RCFV 493
+C++
Sbjct: 86 NGKCYL 91
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +2
Query: 434 AQFVNIGANLFICAATRCFVFLDYPDTLGQNSLWVA-RLLISLVEFQSRNILRAAALAEI 610
A +++ + F+C F+F+ + TLG ++ + + +++S I LA
Sbjct: 292 ASIISVEYHAFVCQGPLRFIFIAFTGTLGLIGIYTPWKKWFNEYKYRSVKIFFFVGLACS 351
Query: 611 VLFPVVLIMALFG 649
L P++ + + G
Sbjct: 352 GLIPMITMFYIKG 364
>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 293 ERGDFSAAATSKNSSTRDLPLAGFH 367
+ G FS+ A KNSS+ +P + FH
Sbjct: 206 QSGPFSSIAPYKNSSSSVIPDSSFH 230
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,833,341
Number of Sequences: 5004
Number of extensions: 59196
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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