Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021751
         (744 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133...    30   2.2  
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751...    29   2.9  
10_03_0016 - 7099862-7099967,7100059-7100357,7101862-7102171,710...    28   6.8  
03_03_0071 + 14257840-14257953,14259031-14259167,14259196-142592...    28   6.8  
01_06_0910 - 32922459-32922646,32922725-32922823,32923371-329235...    28   9.0  

>01_06_0042 -
           25911662-25911736,25912409-25912607,25913275-25913348,
           25913431-25913580,25913666-25913821,25915378-25915464,
           25915706-25915765,25915878-25916414,25917292-25917585
          Length = 543

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -3

Query: 661 QAAVAEQRHDEYDREQHDLGERRGPEDVPRLELDQGDEQTSHPQRILTKSIRIVKEYEAA 482
           + A  EQ   E D+     GER   ED  R E D   E+T  P+ ++   +    E E +
Sbjct: 41  ERAGEEQERAEDDKRDEGDGERDAREDKERREGDSQGEETDEPRGVVRVMLDAPAEREGS 100


>04_03_0258 -
           13573730-13573816,13573881-13574666,13575043-13575126,
           13575254-13575322,13575324-13576228,13576517-13576784
          Length = 732

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 605 EIVLFPVVLIMALFGHCGLMSPFVYYYFVTWRYASRRNPYTRNTF 739
           E  L+  VL   L+G+ G   P +YY ++     SR++P TR TF
Sbjct: 280 ESKLYMTVLPDGLYGYVGSKPPQLYYTYLVDTNKSRKDP-TRVTF 323


>10_03_0016 -
           7099862-7099967,7100059-7100357,7101862-7102171,
           7104402-7105054,7105266-7105554,7106549-7106634
          Length = 580

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -1

Query: 576 RDWNSTREMSRRATHNEF*PRVSG*SRNTKQRVAAQIKRLAPILTNW 436
           R W  TR   RRA+  E    VSG +R    +  A   +L P    W
Sbjct: 429 RYWTQTRRPPRRASGEEELKWVSGTTRRVYTQFVADFDQLMPDRVRW 475


>03_03_0071 +
           14257840-14257953,14259031-14259167,14259196-14259246,
           14260396-14260499,14260887-14261020
          Length = 179

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 384 EDSAHYLFYSLIFMNVVPNLLILVPIFLFALLHA 485
           ED   +L + LIFM  +  +LIL  +F+  + HA
Sbjct: 71  EDHGQFLSHVLIFMEPMNVILILKTLFVITISHA 104


>01_06_0910 -
           32922459-32922646,32922725-32922823,32923371-32923502,
           32923585-32923743,32924553-32924711,32924897-32925052,
           32925846-32926044
          Length = 363

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 360 PARGRSLVLEFFDVAAALKSPRSRVTLCRMPTLDC*QREHVSNGTQH 220
           P+ G S V   +  A  L    S  TL ++P +D  Q  H++ GT+H
Sbjct: 250 PSLGISQVALGWHHALVLSESSSSSTLVKVPCVDGEQVVHIAAGTEH 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,619,249
Number of Sequences: 37544
Number of extensions: 432710
Number of successful extensions: 1372
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)