Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021751
         (744 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8088| Best HMM Match : UCH (HMM E-Value=1.1e-20)                    25   2.9  
SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)                      29   4.0  
SB_39897| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-13)                 29   5.3  
SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27)                 28   7.0  
SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_8088| Best HMM Match : UCH (HMM E-Value=1.1e-20)
          Length = 379

 Score = 24.6 bits (51), Expect(2) = 2.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 521 QNSLWVA--RLLISLVEFQSRNILRAAALAEIVLFPV 625
           Q SLW     L+I L  F  +NIL    + ++V FPV
Sbjct: 289 QMSLWRLPDTLIIHLKRFSFKNILFRDKITKLVEFPV 325



 Score = 23.4 bits (48), Expect(2) = 2.9
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +2

Query: 464 FICAATRCFVFLDYPDTLGQNSLW 535
           + C    C      P+TLG++  W
Sbjct: 252 YSCTLRECVELFTEPETLGEDDAW 275


>SB_29553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 598 RRGPEDVPRLELDQGDEQTSHPQRILTKSIRIVKEYEAACSSANKKIGTNINKLGTTFMK 419
           R  P+ +   ++  G ++     R+   S++I+KE  A  S   KK+     KL T F+K
Sbjct: 369 RGSPKSISYSDVKSGGKEDKTANRV-QNSLKIMKEKIALLSKRGKKLTKRSAKLKTEFLK 427


>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 646 EQRHDEYDREQHDLGERRGPEDVP 575
           EQ+H+EY    H + +   PEDVP
Sbjct: 39  EQQHEEYSVPAHSMAQVPQPEDVP 62


>SB_9614| Best HMM Match : GBP (HMM E-Value=1e-31)
          Length = 708

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 20/77 (25%), Positives = 40/77 (51%)
 Frame = +3

Query: 297 AATSALRLHQRIPAREISLSRDFMARFFLEDSAHYLFYSLIFMNVVPNLLILVPIFLFAL 476
           AA SA+    R  AR    ++D  A  F   + H +   +I +N++  +++L+ I +  +
Sbjct: 498 AAFSAIEQEYRTRARG---AKDVCASVFF--AYHPVSLCMIVLNIIIIIIMLIIIIIIIM 552

Query: 477 LHAASYSLTILILLVKI 527
           L      LTI+I+++ +
Sbjct: 553 LTIIIIMLTIIIIIIML 569


>SB_39897| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-13)
          Length = 303

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 190 VALWGVRVITVLCTIGYVFPLLTI 261
           +  W + +  VL T+G VF LLTI
Sbjct: 163 IVYWDIYIALVLATVGVVFALLTI 186


>SB_12463| Best HMM Match : IPP-2 (HMM E-Value=1.2e-27)
          Length = 197

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = -3

Query: 628 YDREQHDLGERRGPEDVPRLELDQGDEQTSHPQRILTKSIRIVKEY 491
           YD    D   R+  ED P  + ++ DE  +  +R+  K     ++Y
Sbjct: 112 YDHRMQDQPRRKSWEDTPEEDEEEDDENLTEEERLKKKEFEEHRKY 157


>SB_16234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1150

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 574 RLELDQGDEQTSHPQRILTKSIRIVKEYEAACSSANKKIGTNINKLGTTFM 422
           RLE+D+  E+  HP+R        V+E EA  S + K +   + K   T M
Sbjct: 542 RLEVDRCLEEDPHPRRSAAVREVDVEEEEADVSCSEKLLAEEMQKQQRTLM 592


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,856,982
Number of Sequences: 59808
Number of extensions: 476145
Number of successful extensions: 1383
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2010148439
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)