Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021749
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.58 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   1.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.3  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   7.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.4  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.4  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   9.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   9.4  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.4 bits (53), Expect = 0.58
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 399 YLFYSLIFMNVVPNLLILVPIF 464
           +LF  LIF++V  N+L+ V I+
Sbjct: 30  FLFLILIFLSVAGNILVCVAIY 51


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 269 GILQSVTRERGDFSAAATSKNSS 337
           G+ +SV+ ERG  + + TSK S+
Sbjct: 390 GVNESVSYERGSMTVSVTSKPST 412


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 93  NQYGRSKSASRRH-WSTKRHPSLESSHHCQ*NRRSSLGGPRNHRAVYH 233
           N+   S +  RRH  +    PS E   +      SSL   RNH+++YH
Sbjct: 9   NKILTSLTRLRRHIQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYH 56


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 315 RLHQRIPAREISLSR 359
           RLH R+P R  +L R
Sbjct: 108 RLHSRLPGRNFNLLR 122


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +3

Query: 474 LLHAASYSLTILILLVKIRCGWLV 545
           L+H A   L +  L++ +  GW +
Sbjct: 77  LMHLAIADLLVTFLMMPLEIGWAI 100


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -1

Query: 183 FIGNDVSFQGWDAFWWTSVACLLI 112
           F  ND+ +QG     WT  +   I
Sbjct: 285 FQANDIQYQGASDILWTQASAKAI 308


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 608 IVLFPVVLIMALFGHCG 658
           IVL  ++ +++ FG CG
Sbjct: 56  IVLGSIIFVISFFGCCG 72


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 401 IVRAVLQEEPRHEIPREGD 345
           +V  VLQ  P  E+ + GD
Sbjct: 26  LVNTVLQPRPSFELSKNGD 44


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 401 IVRAVLQEEPRHEIPREGD 345
           +V  VLQ  P  E+ + GD
Sbjct: 28  LVNTVLQPRPSFELSKNGD 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,328
Number of Sequences: 438
Number of extensions: 3926
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)