Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021748
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.2  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 435 PENTVFDAKRLIGREWSDQTVQHDVSSSPS-RSLKRTANLMFKYK 566
           P N    AK +IG+++S   V H  SS  +   +K+    + KY+
Sbjct: 468 PLNVQRAAKCIIGKDYSLPMVNHSKSSRINIERMKQVYQQLNKYR 512


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 700 IEISRHCNNSMSNLFSKVS 644
           IE++  CN S ++L ++V+
Sbjct: 527 IEVTEDCNKSFNDLLTQVA 545


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = -3

Query: 105 QPR*DHFKMLLSNTCVFKQYTDTFRSIVQEKPVGG 1
           QP  +  +   + + V   +  TFR++ + +P+GG
Sbjct: 536 QPGKNTIEQKSTKSSVTIPFERTFRNLDENRPIGG 570


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,654
Number of Sequences: 438
Number of extensions: 4176
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)