Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021747X
         (481 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                115   2e-26
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   7e-21
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           71   4e-13
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              64   8e-11
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     38   0.004
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.053
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.21 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               30   0.86 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              29   1.5  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.0  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   2.6  
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)               27   6.1  
SB_30629| Best HMM Match : ERG4_ERG24 (HMM E-Value=0)                  27   8.0  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              27   8.0  
SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)                  27   8.0  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  27   8.0  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  115 bits (277), Expect = 2e-26
 Identities = 53/59 (89%), Positives = 55/59 (93%)
 Frame = +3

Query: 252 GKGSFKDAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHREAIKNMIRGTSQ 428
           GKGSFK AWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHR+ IKNMI GTSQ
Sbjct: 2   GKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 7e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +1

Query: 106 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 252
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 33/89 (37%), Positives = 54/89 (60%)
 Frame = +3

Query: 210 QTYHREVREGGPGNGKGSFKDAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGH 389
           + Y RE +E      + ++  +W LD  + ER++G T+++    F+T   + T++DAPGH
Sbjct: 177 EKYEREAKE----KNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFTLLDAPGH 232

Query: 390 REAIKNMIRGTSQADCAVLSVAAGTGEFE 476
           +  + NMI G +QAD  VL ++A  GEFE
Sbjct: 233 KSFVPNMISGATQADLGVLVISARKGEFE 261



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 190 YKCGGIDKRTIEKFEKEAQEMGKD 261
           Y  G +DKRT+EK+E+EA+E  ++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRE 189


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 63.7 bits (148), Expect = 8e-11
 Identities = 28/53 (52%), Positives = 39/53 (73%)
 Frame = +3

Query: 321 IDIALWKFETSKYYVTIIDAPGHREAIKNMIRGTSQADCAVLSVAAGTGEFEA 479
           +D+ L +F+T    +T++DAPGH++ I NMI G +QAD A+L V A TGEFEA
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEA 53


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 285 DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHREAIKNMIRGTSQAD--CAVLSVAA 458
           D ++ ER+RGI++  ++  F      + I+D PGH++  ++  R  +  D    V+ VA 
Sbjct: 55  DFMEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAK 114

Query: 459 GTGE 470
           G  E
Sbjct: 115 GVEE 118


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.053
 Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +3

Query: 237 GGPGNGKGSFKDAWVLDKLKAERERGITIDIALWKFET-SKYYVTIIDAPGHREAIKNMI 413
           G   +GK +  DA     + A    GIT  I  +  +  S   +T ID PGH        
Sbjct: 35  GHVDHGKTTLLDALRNSSVAAGEAGGITQHIGAFLVKLPSGEKITFIDTPGHAAFNSMRA 94

Query: 414 RGTSQADCAVLSVAAGTG 467
           RG +  D  VL VAA  G
Sbjct: 95  RGANVTDIVVLVVAADDG 112


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +1

Query: 106 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 201
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 30.3 bits (65), Expect = 0.86
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = +3

Query: 237 GGPGNGKGSFKDAWVLDKLKAERERG-ITIDIALWKFETSKYYVTIIDAPGHREAIKNMI 413
           G   +GK S  D ++ +    E E G IT  I  +  +     +  +D PGH        
Sbjct: 98  GHVDHGKTSLLD-YIRNANVIEGESGGITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRA 156

Query: 414 RGTSQADCAVLSVAA 458
           RG    D  ++ VAA
Sbjct: 157 RGAQVTDLVIIVVAA 171


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 121 THINIVVIGHVDSGKSTTTGHLIY 192
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 13/58 (22%)
 Frame = +3

Query: 285 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHREAIKNMIRG 419
           DK    +ERGIT+D+    F+ +                +T++D PGH   IK +I G
Sbjct: 65  DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG 122


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +3

Query: 279  VLDKLKAERERGITI 323
            VLDKL+ ERERGIT+
Sbjct: 1977 VLDKLQVERERGITV 1991



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 130  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 228
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +3

Query: 288 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHREAIKNMIRGTSQADCAVLSVA 455
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L +A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1535

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 189  LQMWWY*QTYHREVREGGPGNGKGSFKDAW 278
            L+ WW  + Y+R+   G  GN   S +D+W
Sbjct: 1490 LENWWLERGYNRDDLRGCHGNDDDSDEDSW 1519


>SB_4257| Best HMM Match : Collagen (HMM E-Value=0.00073)
          Length = 863

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 307 SRSAFSLSNTQASLKDPFPFPGPPSRTSRWYVCQYHHIC 191
           S S  S S + ++     P P P S  + +Y C +H+ C
Sbjct: 163 SSSTISPSQSSSTTAATSPPPPPSSHFNCYYFCYHHYCC 201


>SB_30629| Best HMM Match : ERG4_ERG24 (HMM E-Value=0)
          Length = 486

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/24 (33%), Positives = 18/24 (75%)
 Frame = -1

Query: 103 LVSGVMGILISLFHFTKQYFFDTH 32
           +++ ++GIL++ F + K ++F TH
Sbjct: 197 VLANILGILLTAFVYVKAHYFPTH 220


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 369 IIDAPGHREAIKNMIRGTSQADCAVLSV 452
           IID PGH        RG+S  D A+L V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_35901| Best HMM Match : AT_hook (HMM E-Value=0.34)
          Length = 394

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 115 PCPFLVSGVMGILISLFHFTKQYFFDT 35
           PCPF+ S +  + +S   F+K+ F DT
Sbjct: 368 PCPFVASIISLLCLSAAFFSKRAFSDT 394


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 127 INIVVIGHVDSGKSTTTGHLIY 192
           + + V+G+VD+GKST  G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,503,726
Number of Sequences: 59808
Number of extensions: 275029
Number of successful extensions: 693
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)