Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021746
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    29   0.52 
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.2  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    27   2.8  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   6.4  
SPMIT.08 |||mitochondrial ribosomal small subunit|Schizosaccharo...    26   6.4  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    26   6.4  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    25   8.5  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    25   8.5  

>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 191 RSGEKTDSQAKAKGR--KTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDI 337
           +  E  +S  K +GR  KTC K  +   +   +  GK  +  + E NDE I
Sbjct: 179 KDAEFLESYLKKEGRSPKTCAKALDTARRALEVVLGKGRQISKAEWNDEQI 229


>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 314

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 212 SQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDED 334
           +Q++ K  +    KA ++  +K+I   KRN+ +   T +ED
Sbjct: 202 TQSREKNEQNLSSKASVLRNKKSILLKKRNQDETQLTTEED 242


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +2

Query: 182 RD*RSGEKTDSQAKAKGR---KTCQKKAEIVEKRKAIKQ 289
           R   S   +D QA+++ R   +T Q++AEI EKRK  K+
Sbjct: 173 RSVESYSSSDYQARSRRRFSEETTQRRAEIKEKRKKRKE 211


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 212 SQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDI 337
           S   + GR+  +K  ++VEKR  I+ G  ++A  I  + + +
Sbjct: 704 SSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIYGDTDSV 745


>SPMIT.08 |||mitochondrial ribosomal small
           subunit|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 227

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 90  FYPFSTTNFPLQLIINNLIMYLLEKH 13
           +YP    N+P   II+N+I   L  H
Sbjct: 61  YYPLLNKNYPNPSIISNIIQKALSNH 86


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 150 QPDPVFRKELLETEDQVKKLT 212
           Q + V+RK LLE ED  K+LT
Sbjct: 346 QLETVYRKTLLEWEDLYKRLT 366


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/49 (24%), Positives = 29/49 (59%)
 Frame = +2

Query: 230 GRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKKPVVKGFSDDNK 376
           G K  ++  E+ E ++++ + + ++ ++I  N+ED+KK +  G    N+
Sbjct: 102 GVKMLKESKEVRESQQSL-ENEFDKVEKIIVNEEDMKKTLELGLPASNR 149


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 191 RSGEKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIE 319
           ++  + +  AK +  +  +++ E   KRKA ++GKR   K  E
Sbjct: 672 KAKREAEENAKREAEEKVKRETEENAKRKAEEEGKREADKNPE 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,241
Number of Sequences: 5004
Number of extensions: 21055
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)