Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021746
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0356 - 17142019-17142899,17145251-17145290,17145381-171455...    31   1.3  
03_05_0200 - 21911260-21911322,21911655-21911705,21911756-219118...    30   2.2  
04_01_0308 + 4188726-4190351                                           29   3.8  
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937...    29   5.1  
11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415           28   8.8  

>07_03_0356 -
           17142019-17142899,17145251-17145290,17145381-17145512,
           17145762-17145815,17145913-17145993,17146860-17146955,
           17147439-17147611,17147750-17147823,17148515-17148622,
           17148693-17148868,17149305-17149352,17150665-17150775,
           17152172-17152226,17153434-17153534,17154176-17154290,
           17155505-17155698
          Length = 812

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 203 KTDSQA-KAKGRKTCQ-KKAEIVEKRKAIKQGKRNEAKEIETNDEDIKKPVVKGFSDDNK 376
           KTD+   K KGR   + KK E  E+RK  ++ K+  AKE++   E  +    K   +  K
Sbjct: 652 KTDAHMHKIKGRLLSEKKKIEEAEERKKAREAKK-RAKEVQAQKEKERAKQKKEQIESVK 710

Query: 377 EW 382
           +W
Sbjct: 711 KW 712


>03_05_0200 -
           21911260-21911322,21911655-21911705,21911756-21911851,
           21911947-21912045,21913213-21913526,21913621-21913696,
           21913788-21915136,21915344-21915944
          Length = 882

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 212 SQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKKPVV 352
           +Q KAK R+  +  +E  + +   + GKRN   E+   + D+ +P++
Sbjct: 79  AQCKAKNRRALKVDSERPDFKNQRQCGKRNLEDEVPKEEVDLDEPII 125


>04_01_0308 + 4188726-4190351
          Length = 541

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +2

Query: 194 SGEKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKKPV 349
           +GE+  S++KAK +    + + +VE ++A  +    E  +I    ED+KK V
Sbjct: 357 TGEQKQSKSKAKAKSLKVELSALVEAKEATAKAFDVEKAKIMKELEDLKKKV 408


>02_04_0516 +
           23593088-23593116,23593209-23593336,23593527-23593714,
           23593861-23593919,23594997-23595345,23596081-23596333,
           23596404-23597476
          Length = 692

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +2

Query: 200 EKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKK 343
           +K   + K K +K  +KK +  +K+K  K+   N+A+ I ++   IKK
Sbjct: 79  KKKKKKKKKKNKKKKKKKKKKKKKKKKKKRWPSNKAQHIMSDTSHIKK 126


>11_01_0373 + 2826646-2826676,2827010-2827268,2828325-2828415
          Length = 126

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +2

Query: 200 EKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKK 343
           E    +AKAK +K  +KK    +K K  K+ K+ + KE E  + D+++
Sbjct: 41  ELRKKKAKAKVKKKPKKKKN--KKAKKKKKKKKKKKKEEEEEESDVRQ 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,543,681
Number of Sequences: 37544
Number of extensions: 122471
Number of successful extensions: 411
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)