Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021746
(736 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 34 0.14
SB_3878| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7) 31 0.73
SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013) 30 2.2
SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81) 29 3.0
SB_37125| Best HMM Match : DUF1542 (HMM E-Value=0.76) 29 3.0
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_36664| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_45594| Best HMM Match : EB1 (HMM E-Value=3.1) 29 5.2
SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25) 29 5.2
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 29 5.2
SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1) 28 6.8
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18) 28 6.8
SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05) 28 9.0
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 28 9.0
SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84) 28 9.0
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/63 (28%), Positives = 36/63 (57%)
Frame = +2
Query: 185 D*RSGEKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKKPVVKGFS 364
D ++ ++ + + + K +K ++ E +K+K K+ K+ E +E E DE +K + GF
Sbjct: 1913 DKKNNKEENEEDEKKEKKKKEENEEEDDKKKKTKKKKKKEEEEQE-EDERRRKEIHNGFR 1971
Query: 365 DDN 373
D+N
Sbjct: 1972 DNN 1974
>SB_3878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 243
Score = 32.3 bits (70), Expect = 0.42
Identities = 15/60 (25%), Positives = 33/60 (55%)
Frame = +2
Query: 200 EKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKKPVVKGFSDDNKE 379
E+ + + A ++ +++ + EK + ++ NE +EIE ++D +K + DDN+E
Sbjct: 146 EEIEKREDANEKEEIEEREDANEKEEIEEREDDNEKEEIEEREDDNEKEEIDEREDDNEE 205
>SB_43512| Best HMM Match : RNA_pol_delta (HMM E-Value=4.7)
Length = 241
Score = 31.5 bits (68), Expect = 0.73
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +2
Query: 173 GAIRD*RSGEKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKK--P 346
G +D SGE D++ K K + K ++ EK+ + K+++ K+++ ED KK
Sbjct: 138 GNAKDEASGESDDAKPKTKDAEKKDDKKKVDEKK---EDEKKDDDKKVDEKKEDDKKNDS 194
Query: 347 VVKGFSDDNKE 379
G S+D+ +
Sbjct: 195 SASGESEDSDD 205
>SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = +2
Query: 191 RSGEKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKKPVVKGFSDD 370
+S + + + + ++ Q + + E+ KA K+ +RN++ E E D D K K ++
Sbjct: 165 KSDDDENKEGGVRSKRVDQDQEKAKEEGKAEKEAERNDSSEDENKDSDAKAAQTKEVEEE 224
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 31.1 bits (67), Expect = 0.97
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +2
Query: 200 EKTDSQAKAKGRKTCQKKAEIVEKRKAIKQ--GKRNEAKEIETNDED 334
E DS K KG+K + EK KA KQ G+ + KEI+ ND++
Sbjct: 783 EDEDSSGKKKGKKDSSES----EKGKAKKQRKGREKKGKEIKKNDDE 825
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 203 KTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKKPVVKGFSDDNKEW 382
KT + + + Q++ E ++ R KQ +E IE D D KK + KEW
Sbjct: 270 KTPEKERKRSESIRQQEKEALKIRDPEKQALEDEYNHIEVIDRDAKKHMFVDEKKSIKEW 329
>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 853
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 212 SQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKKPVVKGFSDDNKE 379
SQ K + K +K+ + EKR + K E K N++ + P+V +DDN+E
Sbjct: 698 SQCKKENMKRQEKEEK--EKRAKERAEKEKERKSRMENEKSKRNPLVDMNADDNQE 751
>SB_32968| Best HMM Match : SRP40_C (HMM E-Value=0.013)
Length = 440
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 197 GEKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDED 334
G+KT ++ ++ + + K+KA +GK+ +AK+ +++ED
Sbjct: 170 GKKTQAKQESSSEDDSSDEEDEKPKKKADNKGKKTQAKQESSSEED 215
>SB_37866| Best HMM Match : CDC37 (HMM E-Value=0.81)
Length = 461
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +2
Query: 170 KGAIRD*RSGEKTDSQAKA----KGRKTCQKKAEIVEKRKAIKQGKRNEAK 310
KG +R + E T K K RK + K + VEK+K K GK EAK
Sbjct: 121 KGPMRTEHAQEVTAENKKPTKDEKTRKVLKSKLDKVEKKKKSKLGKSKEAK 171
>SB_37125| Best HMM Match : DUF1542 (HMM E-Value=0.76)
Length = 580
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 170 KGAIRD*RSGEK-TDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNE 304
KG R+ R G+ +S+ K KG++ ++K + EK K ++GK E
Sbjct: 267 KGEAREERGGQAGKESKGKEKGKEKEKEKEKGKEKEKGKEKGKEQE 312
>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1503
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Frame = +2
Query: 200 EKTDSQAKAKG-----RKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIK 340
E TD++A+ K R+ +KKAEIV ++A+++ + +I+ N E ++
Sbjct: 565 EITDAEAQLKPIESELREEEKKKAEIVNSKEAMEEASHKKLTDIKNNGEKVQ 616
>SB_36664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/47 (31%), Positives = 29/47 (61%)
Frame = +2
Query: 203 KTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKK 343
K + + +A+ ++ +KK E +KR+ IK+ K + KEI+ E +K+
Sbjct: 298 KDERRKEARKQREERKKKEKEQKREEIKRMKNLKRKEIQDKLEKLKE 344
>SB_45594| Best HMM Match : EB1 (HMM E-Value=3.1)
Length = 264
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 191 RSGEKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKR 298
RS E +D A A+ ++ A+ EKRK K+GKR
Sbjct: 173 RSSETSDETASAEMYQSAMYDADTNEKRKYRKKGKR 208
>SB_6006| Best HMM Match : Annexin (HMM E-Value=2.4e-25)
Length = 803
Score = 28.7 bits (61), Expect = 5.2
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 170 KGAIRD*RSGEKTDSQAKA-KGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDED 334
K A D G+K + K KGRK + K E EK KA GK EAK+ + N++D
Sbjct: 279 KKAAGDKGQGQKVEKAKKQEKGRKEEKSKKEEKEKNKA--GGK--EAKKDKANEKD 330
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +2
Query: 200 EKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKKPVVKGFSDDNK 376
E + +K + Q ++++ + K G+R+E KEI+T + ++K F D+ +
Sbjct: 1484 EHKERYSKGQDVPLHQANDPLIDELEDFKHGRRDEQKEIQTYEVKVEKRGGTVFEDERR 1542
>SB_58905| Best HMM Match : NESP55 (HMM E-Value=5.1)
Length = 510
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +2
Query: 248 KKAEIVEKRKAIKQGKRNEAKEIETNDE 331
+KA EK+ A KQ K+NE E + NDE
Sbjct: 482 EKANKKEKKAAKKQQKKNEPTEDKDNDE 509
>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
Length = 398
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 221 KAKGRKTCQKKAEIVE-KRKAIKQGKRNEAK 310
K + +TCQ+K +I+E +R A K KR E+K
Sbjct: 230 KQRRYETCQRKLQIIENERNAAKGKKRYESK 260
>SB_54715| Best HMM Match : Hexapep (HMM E-Value=1.2e-05)
Length = 1143
Score = 27.9 bits (59), Expect = 9.0
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 197 GEKTDSQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIETNDEDIKKPVVKGFSDDNK 376
GE +DS + +K +KK +++K IK+ R + E E+ +E K+ VK DD K
Sbjct: 764 GENSDSSRERSIKKHKKKK----KRKKKIKKN-RKKTMENESKNEKNKRGPVKNNEDDLK 818
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 212 SQAKAKGRKTCQKKAEIVEKRKAIKQGKRNEAKEIE 319
++AKA+ + +++ EKRKA ++ R +A E+E
Sbjct: 185 AEAKARFEQEAERRRREAEKRKAEEEEARRKADELE 220
>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 245 QKKAEIVEK-RKAIKQGKRNEAKEIETNDED 334
+KKAE EK RK ++ K+ + KE E DED
Sbjct: 1049 RKKAEEEEKKRKEEEESKKKDEKEKEEEDED 1079
>SB_27965| Best HMM Match : Sec61_beta (HMM E-Value=0.84)
Length = 1737
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +2
Query: 224 AKGRKTCQKKAEIVEKRKA-IKQGKRNEAKEIETNDEDI 337
A+GR+T Q + ++ K+ K+G ++E +T++EDI
Sbjct: 368 ARGRETRQTVIKDIKSSKSGSKRGAKSEVNNFDTDEEDI 406
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,387,869
Number of Sequences: 59808
Number of extensions: 152745
Number of successful extensions: 615
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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