Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021746
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   6.9  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -1

Query: 691 AYPRHHHPHQILLHLNH 641
           A P HHH H    H  H
Sbjct: 428 ATPHHHHSHAATPHHQH 444


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
 Frame = -1

Query: 685 PRHHHPHQI--LLHLNHQ 638
           P HHH HQ   L HL+++
Sbjct: 350 PHHHHHHQTQSLQHLHYR 367


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 287 QGKRNEAKEIETNDEDIKKPVV 352
           Q +RNE +  + +DE  KKP V
Sbjct: 175 QIRRNERRTPDPHDETAKKPRV 196


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/20 (35%), Positives = 16/20 (80%)
 Frame = +2

Query: 323 NDEDIKKPVVKGFSDDNKEW 382
           ND+DIK  +++ F++ N+++
Sbjct: 298 NDDDIKSYLIQFFANKNQKF 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,057
Number of Sequences: 438
Number of extensions: 1566
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)