Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021745
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)             28   6.2  
SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)              28   6.2  
SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_13473| Best HMM Match : DUF1040 (HMM E-Value=1.5)                   28   6.2  
SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)                       28   8.1  

>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 858

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/48 (39%), Positives = 31/48 (64%)
 Frame = +3

Query: 114 QALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSESDS 257
           +A E+R + K  GA++ EE S   ++D+L +I+  C  CFKE +E +S
Sbjct: 49  KAQEIRTFLKEQGADLKEE-SITPLQDELAEILECCQVCFKEDAELES 95


>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1801

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/50 (34%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = +1

Query: 520 KEFANCPPSSEQMQKLYRLLHQVLKDQNSELAAKAMIELLGTY-TDENAS 666
           K   +C P+S+ ++KL++L+ +  K+   E++ KA+  L G Y T +NA+
Sbjct: 627 KTLLDCVPTSDLVEKLFQLVSKTGKEW-KEVSKKAVSILCGPYLTADNAT 675


>SB_23483| Best HMM Match : Glyco_hydro_38C (HMM E-Value=0)
          Length = 965

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 565 LYRLLHQVLKDQNSELAAKAMIELLGTYTDENASYARE 678
           L RL HQ   D++S+L+    + L G +TD   S   E
Sbjct: 839 LIRLEHQFEADEDSKLSMPVNVSLQGLFTDLEVSKVEE 876


>SB_40313| Best HMM Match : Glyco_hydro_38 (HMM E-Value=0)
          Length = 887

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 565 LYRLLHQVLKDQNSELAAKAMIELLGTYTDENASYARE 678
           L RL HQ   D++S+L+    + L G +TD   S   E
Sbjct: 827 LIRLEHQFEADEDSKLSMPVNVSLQGLFTDLEVSKVEE 864


>SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 523 EFANCPPSSEQMQKLYRLLHQVLKDQNSELAA--KAMIE-LLGTYTDEN 660
           EF    P  E    + RLL Q+  DQ+SELA   K++ +  LG Y D N
Sbjct: 294 EFKLKSPDVEDRLAVTRLLSQMFSDQSSELAIQNKSLWQSYLGRYLDIN 342


>SB_13473| Best HMM Match : DUF1040 (HMM E-Value=1.5)
          Length = 154

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 570 IQFLHLFTRR-WAVSKLFPKLLTPVKTSLT 484
           IQF+   TRR W  S LFP+L   ++ S T
Sbjct: 125 IQFMRFSTRRPWFASMLFPRLKAELENSST 154


>SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)
          Length = 351

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 419 PNSPLRYHVYYHVIE 463
           P+ PL YH +YHVI+
Sbjct: 288 PDDPLDYHFFYHVID 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,023,045
Number of Sequences: 59808
Number of extensions: 358619
Number of successful extensions: 963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)