Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021744
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   2.1  
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su...    25   8.7  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 541 TGSARGRLHREMVPHRGHRLGKGTPVPDQTPGSDRARRLRDRVLS 675
           TGS + R++ E +      +G+G PVP+  PG   A    D  ++
Sbjct: 349 TGSLKRRVYPEQITIN---IGEGVPVPEPLPGHQWAEVKHDNTVT 390


>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
           Sum3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 320 ELPTDLSQVIKQNKKQNGDGHYGSGIARFNHN 415
           +LPTD+   + +  +    G+ G  +A FN N
Sbjct: 506 DLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRN 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,433
Number of Sequences: 5004
Number of extensions: 44693
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)