Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021744
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0180 + 15502809-15503312,15503399-15503454,15503934-155040...    50   1e-06
03_01_0359 - 2805094-2805175,2805256-2805347,2805443-2805517,280...    36   0.034
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279...    31   1.3  
05_04_0345 + 20451497-20451740,20452078-20452159,20452837-204528...    28   6.9  
12_01_0511 + 4049760-4049967,4050096-4050166,4051306-4051364,405...    28   9.1  

>10_08_0180 +
           15502809-15503312,15503399-15503454,15503934-15504053,
           15504190-15504260,15504603-15504696,15504772-15504978,
           15505406-15505657,15505781-15505889,15506112-15506179,
           15506278-15506347,15506429-15506503,15506600-15506691,
           15506779-15506860
          Length = 599

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 23/74 (31%), Positives = 38/74 (51%)
 Frame = +2

Query: 518 LYQSGVDRLGRPVVVFIGKWFPIGDIDXXXXXXXXXXXXDPIVRGDYVIAYFHTLASSAN 697
           +Y+ GVD  GRPV+V +G  F +  +D            +P+++  Y I YFH+ AS   
Sbjct: 435 IYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLHVVKEFEPLIQKPYSIVYFHSAASLQP 494

Query: 698 HPPFSWLKEVYTVL 739
            P   ++K +  +L
Sbjct: 495 QPDLGFMKRLQQIL 508


>03_01_0359 -
           2805094-2805175,2805256-2805347,2805443-2805517,
           2805582-2805675,2805769-2805872,2806777-2806885,
           2807397-2807609,2808170-2808289,2809060-2809115,
           2809210-2809287,2809374-2809733
          Length = 460

 Score = 35.9 bits (79), Expect = 0.034
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
 Frame = +2

Query: 521 YQSGVDRLGRPVVVFIGKWFPIGDIDXXXXXXXXXXXX------------DPIVRGDYVI 664
           Y+ GVD  GRPV+V +G  F +  +D                        +P+++  Y I
Sbjct: 277 YRGGVDSEGRPVMVVVGAHFLLRCLDLERFILYVVKLILTGLNLPSLQEFEPLIQKPYSI 336

Query: 665 AYFHTLASSANHPPFSWLKEVYTVL 739
            YFH+ AS    P   ++K +  +L
Sbjct: 337 VYFHSAASLQVRPDLGFMKRLQQIL 361


>03_05_0640 -
           26326832-26327166,26327295-26327529,26327665-26327908,
           26328389-26328507,26328860-26329050,26329133-26329220,
           26331653-26331715,26331816-26333944,26334084-26334186
          Length = 1168

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 22/59 (37%), Positives = 29/59 (49%)
 Frame = +1

Query: 538 STGSARGRLHREMVPHRGHRLGKGTPVPDQTPGSDRARRLRDRVLSHAGLVGEPSALLV 714
           ++GS R R+       R  R    TP P+ T  S+RARR R R  S    +  P AL+V
Sbjct: 296 ASGSPRARVLTPEPATRSPRARVQTPEPEPTASSERARRPRKR--SSLRFLVAPLALVV 352


>05_04_0345 +
           20451497-20451740,20452078-20452159,20452837-20452882,
           20453669-20454352
          Length = 351

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 564 KTTTGRPSRSTPL*YRHPIQIPRSG 490
           KT++G P+   P  + HPI +P +G
Sbjct: 137 KTSSGEPAHQLPQKWAHPITMPEAG 161


>12_01_0511 +
           4049760-4049967,4050096-4050166,4051306-4051364,
           4052424-4052549,4052943-4053037,4053263-4053312
          Length = 202

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +1

Query: 517 SVSERRGSTGSARGRLHREMVPHRGHRLGKGTPV 618
           S S RR   GSARGR   E     G R  +  PV
Sbjct: 6   SSSRRRRWVGSARGRCAEESASAAGRRRSRSRPV 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,949,013
Number of Sequences: 37544
Number of extensions: 311489
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)