Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021744
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)                 46   4e-05
SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)               46   4e-05
SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002

>SB_34326| Best HMM Match : CRAL_TRIO (HMM E-Value=0.1)
          Length = 429

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 635 DPIVRGDYVIAYFHTLASSANHPPFSWLKEVYTVL 739
           D IV  DYV+ YFHT ++  N PP S+LKE+Y ++
Sbjct: 300 DRIVNRDYVVVYFHTHSTEENQPPMSFLKELYHIV 334


>SB_8978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 635 DPIVRGDYVIAYFHTLASSANHPPFSWLKEVYTVL 739
           D IV  DYV+ YFHT ++  N PP S+LKE+Y ++
Sbjct: 10  DRIVNRDYVVVYFHTHSTEENQPPMSFLKELYHIV 44


>SB_43333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = +2

Query: 635 DPIVRGDYVIAYFHTLASSANHPPFSWLKEVYTVL 739
           D  V  DY I YFH   +S N P FSWL ++Y  L
Sbjct: 187 DQYVESDYTIVYFHYGLTSKNKPNFSWLHQIYKEL 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,650,444
Number of Sequences: 59808
Number of extensions: 348954
Number of successful extensions: 683
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)