Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021744
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69340.1 68414.m07956 appr-1-p processing enzyme family prote...    52   5e-07
At4g35750.1 68417.m05074 Rho-GTPase-activating protein-related c...    35   0.066
At1g23560.1 68414.m02964 expressed protein contains Pfam profile...    29   2.5  
At4g10970.3 68417.m01785 expressed protein                             28   5.7  
At4g10970.2 68417.m01784 expressed protein                             28   5.7  
At4g10970.1 68417.m01783 expressed protein                             28   5.7  
At3g10210.1 68416.m01222 expressed protein similar to putative p...    28   7.6  

>At1g69340.1 68414.m07956 appr-1-p processing enzyme family protein
           contains Pfam domain PF01661: Appr-1-p processing enzyme
           family
          Length = 562

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 23/74 (31%), Positives = 37/74 (50%)
 Frame = +2

Query: 518 LYQSGVDRLGRPVVVFIGKWFPIGDIDXXXXXXXXXXXXDPIVRGDYVIAYFHTLASSAN 697
           +Y+ GVD  G PV+V +G  F +  +D            +P+++  Y I YFH+ AS   
Sbjct: 400 VYRGGVDTEGHPVMVVVGAHFLLRCLDLERFVLYVIKEFEPVIQKPYSIVYFHSAASLQV 459

Query: 698 HPPFSWLKEVYTVL 739
            P   W+K +  +L
Sbjct: 460 QPDLGWMKRLEQIL 473


>At4g35750.1 68417.m05074 Rho-GTPase-activating protein-related
           contains weak similarity to Rho-GTPase-activating
           protein 1 (GTPase-activating protein rhoOGAP)
           (Rho-related small GTPase protein activator) (CDC42
           GTPase-activating protein) (p50-rhoGAP)
           (Swiss-Prot:Q07960) [Homo sapiens]
          Length = 202

 Score = 34.7 bits (76), Expect = 0.066
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 530 GVDRLGRPVVVFIGKWFPIGDIDXXXXXXXXXXXXDP-IVRGDYVIAYFHT-LASSANHP 703
           G D+ GR ++  IGK+FP   +              P + R  + + Y HT +  S N P
Sbjct: 24  GRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIFPRLGRKPFAVLYVHTGVQRSENFP 83

Query: 704 PFSWLKEVYTVLP 742
             S L+ +Y  +P
Sbjct: 84  GISALRAIYDAIP 96


>At1g23560.1 68414.m02964 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 332

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 295 KSEIILKV*ITNGP*SSYKTKQKTKWRWTLWQWNCQI 405
           K  I  KV I  GP  + + KQ   W++  W   C I
Sbjct: 138 KENISRKVLIDEGPKQTVEVKQAAAWKFLWWDGTCPI 174


>At4g10970.3 68417.m01785 expressed protein
          Length = 217

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 648 RTIGSRSLIRYRSAFSKSMSPM-GNHFPMKTTTGRPSRS-TP 529
           R + SRS +R + AF+K  S   GN FP+ TT  R + S TP
Sbjct: 64  RYMDSRSDVR-QGAFAKKRSNFQGNQFPVTTTVARKAASATP 104


>At4g10970.2 68417.m01784 expressed protein
          Length = 217

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 648 RTIGSRSLIRYRSAFSKSMSPM-GNHFPMKTTTGRPSRS-TP 529
           R + SRS +R + AF+K  S   GN FP+ TT  R + S TP
Sbjct: 64  RYMDSRSDVR-QGAFAKKRSNFQGNQFPVTTTVARKAASATP 104


>At4g10970.1 68417.m01783 expressed protein
          Length = 217

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 648 RTIGSRSLIRYRSAFSKSMSPM-GNHFPMKTTTGRPSRS-TP 529
           R + SRS +R + AF+K  S   GN FP+ TT  R + S TP
Sbjct: 64  RYMDSRSDVR-QGAFAKKRSNFQGNQFPVTTTVARKAASATP 104


>At3g10210.1 68416.m01222 expressed protein similar to putative
           protein GB:CAA20045 [Arabidopsis thaliana]
          Length = 237

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
 Frame = +2

Query: 530 GVDRLGRPVVVFIGKWFPIGDID-XXXXXXXXXXXXDPIVRGDYVIAYFH-TLASSANHP 703
           G+DR G  +   +GK+FP   +              +    G   + Y H T+    N P
Sbjct: 59  GLDRSGNRIFRIVGKYFPARVVSAERLKKYISQKISNQCPEGPLCLVYMHSTVQKDDNSP 118

Query: 704 PFSWLKEVYTVLP 742
             + L+ +Y  LP
Sbjct: 119 GITILRWIYEDLP 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,516,324
Number of Sequences: 28952
Number of extensions: 237367
Number of successful extensions: 476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)