Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021742
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    30   0.28 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    28   1.5  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    26   6.1  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    26   6.1  
SPBC2D10.18 |abc1|coq8|ABC1 kinase family protein|Schizosaccharo...    25   8.0  
SPAC1296.04 |mug65||spore wall assembly protein |Schizosaccharom...    25   8.0  

>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 528 LRLACSVCRRQPWRCATGLGHRPVPEQCGRECAGDV*NSQS-RRFHHRWSELRCQ 367
           L LAC  CR++  +C+   G RP  +QC +     +  S S +R H R  E+  Q
Sbjct: 68  LPLACQSCRKKKVKCS---GERPSCDQCLKHNIPCIYKSNSTKRSHSRHEEIHHQ 119


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -3

Query: 428  VMYEILKAGGFTTGGLNFDAKVRRQS----TDKYDLFYGHIGAMDTM 300
            V + +LKA G    GLNF+A V  +     T+K +LF     A +T+
Sbjct: 1300 VYFLLLKACGLIMNGLNFEASVMLEEVISLTEKLELFLLQAFAFETV 1346


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 249 YPLAIFNHARCNFQRQCHR--IHRADMTVKQIIFISTLTTY 365
           +  ++ +HAR +F+R  HR   H  D  +  + +IS LT +
Sbjct: 512 FSTSLVDHARHSFKRMIHRKAKHEYDTRLLIVRYISELTKF 552


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 204 QQILKGQMSLADLAKYAQEHHLSPVHQSG 118
           + +L     L D+A   Q H + P HQ+G
Sbjct: 210 KSVLNNSKGLQDIADDLQIHRIGPQHQAG 238


>SPBC2D10.18 |abc1|coq8|ABC1 kinase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = +1

Query: 316 PI*P*NRSYLSVL*RRTLASKFRPPVVKPPALRISYITSAFSSTLFGNWSVSQPSCASPR 495
           PI P  +  +S      + S  +      PA   ++ T+ F S++  ++S    S   P 
Sbjct: 117 PILPNKKDEISPAKPSAIDSSIKDVTKSHPATNANF-TADFESSIEESYSTENKS---PV 172

Query: 496 LASTDRTGQAQWRWLFHDG 552
           + S+ +   +QW  L+H G
Sbjct: 173 ILSSSKVPSSQWSRLWHYG 191


>SPAC1296.04 |mug65||spore wall assembly protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 487 MRNWAGTPTSSRTVWKRMRW 428
           M NW G P S  +  +R RW
Sbjct: 91  MNNWHGKPVSLHSFVRRRRW 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,237,980
Number of Sequences: 5004
Number of extensions: 71261
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)