Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021742
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1625 - 28219006-28219041,28219150-28219227,28219318-282193... 105 3e-23
04_01_0031 + 381389-381841 31 0.68
07_03_0228 + 15406193-15406356,15406437-15406584 29 2.7
06_03_0454 - 20968052-20969758 29 3.6
10_08_0025 - 14243249-14243377,14243935-14244174,14244266-142443... 29 4.8
06_03_1346 + 29480482-29480676,29480754-29481067,29481164-294812... 29 4.8
08_02_0913 + 22540078-22540166,22540280-22540420,22541151-225412... 28 6.3
08_02_0697 + 20144063-20144341,20144755-20145366 28 6.3
06_03_1209 + 28434676-28435242 28 6.3
11_02_0138 - 8708483-8709033,8709163-8709265,8709312-8709359,871... 28 8.4
11_01_0503 - 3897466-3897996 28 8.4
09_02_0478 - 9749306-9749382,9749543-9749659,9749711-9750398,975... 28 8.4
>07_03_1625 -
28219006-28219041,28219150-28219227,28219318-28219389,
28219468-28219567,28219632-28219708,28219802-28219872,
28219987-28220066,28220143-28220194,28220376-28220431,
28220506-28220551,28220631-28220682,28220787-28220888,
28220967-28221021,28221101-28221180,28221271-28221321,
28221354-28221377,28221742-28221833,28221928-28222057,
28222156-28222230,28222433-28222543,28222637-28222693
Length = 498
Score = 105 bits (252), Expect = 3e-23
Identities = 45/67 (67%), Positives = 54/67 (80%)
Frame = -1
Query: 709 GTLLIEPKPQEPTKHQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATA 530
GTLLIEPKPQEPTKHQYD+D AT + FL+++GL E K+N+E NHATL+GHS HHE+ TA
Sbjct: 277 GTLLIEPKPQEPTKHQYDWDVATTFSFLQKYGLTGEFKINVECNHATLSGHSCHHELETA 336
Query: 529 IALGLFG 509
GL G
Sbjct: 337 RINGLLG 343
Score = 92.7 bits (220), Expect = 3e-19
Identities = 46/96 (47%), Positives = 58/96 (60%), Gaps = 12/96 (12%)
Frame = -3
Query: 509 SVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAK------------ 366
++DAN GD Q+GWDTDQF + E LVM ++K GG GG NFDAK
Sbjct: 344 NIDANTGDPQIGWDTDQFLTDISEATLVMSSVVKNGGLAPGGFNFDAKLLVPADIVFFFC 403
Query: 365 VRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDG 258
VRR+STD D+F HI MDT+A L+ ++IEDG
Sbjct: 404 VRRESTDVEDMFLAHISGMDTLARGLRNVVKLIEDG 439
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 255 VDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHHLSPVHQSGRQEQLENL 94
+D+ + +RY ++SE+G I G+ L K E P+ SG+QE E L
Sbjct: 441 LDELVRKRYQSFDSEIGALIEAGKGDFETLEKKVLEWG-EPIVPSGKQELAEIL 493
>04_01_0031 + 381389-381841
Length = 150
Score = 31.5 bits (68), Expect = 0.68
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 428 PAHSLPHCSGTGRCPSPVAHRHGWRRQT-EQAKRNGGGYFMMERVTCQR 571
PA S P + RH WRR++ + KR GGG ME T R
Sbjct: 101 PAPSAPEMAAAAAEEEEEESRHAWRRRSGAEKKRRGGGARAMEWETSPR 149
>07_03_0228 + 15406193-15406356,15406437-15406584
Length = 103
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -1
Query: 565 AGHSFHHEIATAIALGLFGLSTPTVAMRNWAGTPTSSRTVWKRM 434
A H H + T +A+G G TVA R +GT S+ T W R+
Sbjct: 11 ADHWLHEK--TTVAVGSTGRWRRTVAPREGSGTAGSTMTKWHRV 52
>06_03_0454 - 20968052-20969758
Length = 568
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = -1
Query: 703 LLIEPKPQEPTKHQYDYDAATVYGFLKQ--FGLEKEIKLNIEANHATLAGHSFHHEIATA 530
LL EP+P + A VY F FG+ + + AN A + H +A A
Sbjct: 330 LLPEPRPAVASMGVLMQTTALVYVFPSSLGFGVSTRVGNELGANRPGRARAAAHVAVAGA 389
Query: 529 IALGLFGLSTPTVAMRNW 476
A+GL ++ T W
Sbjct: 390 AAMGLAAMAFATGMRHAW 407
>10_08_0025 -
14243249-14243377,14243935-14244174,14244266-14244360,
14245120-14245198,14249528-14250202,14250288-14250338,
14250439-14250813
Length = 547
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -1
Query: 649 AATVYGFLKQFGLEKEIKLNI--EANHATLAGHSFHHEIATAIALGLFGLSTPTVAMRNW 476
AA V +L GL ++ N+ +A +++GHS ++A A+ALG V++R
Sbjct: 158 AAAVINWLAAGGLTSKLPPNVRADATKISISGHSRGGKVAFALALG-----HANVSLRGG 212
Query: 475 AGTPTSSRTV 446
AG T + V
Sbjct: 213 AGGATIAALV 222
>06_03_1346 +
29480482-29480676,29480754-29481067,29481164-29481236,
29481517-29481627,29481725-29481899,29481992-29482119,
29482310-29482370,29482893-29482963
Length = 375
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Frame = -2
Query: 255 VDKRIAQRYSGWNSELG--QQILKGQMSLADLAKYAQEHHLSPVHQSGRQEQLENLVNHY 82
+DK IA + S W S G +KG + Y Q ++GR ++ +
Sbjct: 239 LDKTIADQVSSWKSSRGLTDDAVKGHSCSGNTCSYTQIGDAYICEKTGRVHVCDDACREF 298
Query: 81 LFDK*RLTVQSVGPVIGSDTGHFFK 7
+ D QS G ++ + +GH F+
Sbjct: 299 VLD------QSSGLLLCTISGHCFE 317
>08_02_0913 +
22540078-22540166,22540280-22540420,22541151-22541281,
22542278-22542460,22542555-22543195
Length = 394
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 466 VSQPSCASPRLASTDRTGQAQWRWLFHDG 552
V QP+ A+P ++STD+ A+WR L DG
Sbjct: 121 VYQPNGAAP-ISSTDKPISARWRILMPDG 148
>08_02_0697 + 20144063-20144341,20144755-20145366
Length = 296
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +2
Query: 374 RSSDHR-W*NRLL*EFHTSPAHSLPHCSGTGRCPSPVAHRHGWRRQTEQAKRNGGGY 541
R+S H W + L+ T+P C T R P GWRR+ +GGG+
Sbjct: 143 RTSPHDLWRDTLVDAPSTTPTTRAARC--TSRSAPPRPDLAGWRRRLAMVAADGGGW 197
>06_03_1209 + 28434676-28435242
Length = 188
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +1
Query: 367 LASKFRPPVVKPPALRISYITSAFSSTLFGNWSVSQPSCASPRLA 501
LA+ PP +PPA + TS+ SST+ +WS P A+ LA
Sbjct: 74 LAAPSAPPP-RPPAAAAAAATSSHSSTV-ESWSGGAPRAAASALA 116
>11_02_0138 -
8708483-8709033,8709163-8709265,8709312-8709359,
8713887-8714359,8716353-8716508,8716572-8716617,
8716657-8716713
Length = 477
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 535 TAIALGLFGLSTPTVAMRNWAGTPTSSRTV 446
TAI LF L+ P++A+ N + T SRTV
Sbjct: 361 TAIESSLFDLNLPSIAIPNLKTSQTISRTV 390
>11_01_0503 - 3897466-3897996
Length = 176
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 397 KPPALRISYITSAF-SSTLFGNWSVSQPSCASPRLASTDRTGQAQWRWLFHDGKS 558
KP A+R++ S SST FG + +S+ G+AQ + F D K+
Sbjct: 46 KPTAIRVAQAASTNGSSTFFGAVVAIDDPLTTDAASSSSEVGRAQGSYTFADQKT 100
>09_02_0478 -
9749306-9749382,9749543-9749659,9749711-9750398,
9750521-9751161,9751336-9751462
Length = 549
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 329 YGHIGAMDTMALALKIAARMIEDGEWINASRSVIPAGIANWA 204
+GH + T+ALA K+ ARM + +R ++ +A W+
Sbjct: 428 FGHANVLQTLALAWKLLARMGYRLSAMLLARIIMQLALAYWS 469
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,649,127
Number of Sequences: 37544
Number of extensions: 542988
Number of successful extensions: 1548
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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