Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021742
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25866| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_23613| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_39527| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07) 28 6.5
SB_56290| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_43580| Best HMM Match : DNA_primase_S (HMM E-Value=5.9) 28 8.5
SB_37717| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_33630| Best HMM Match : DIRP (HMM E-Value=5.9) 28 8.5
>SB_25866| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 42.3 bits (95), Expect = 4e-04
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = -1
Query: 709 GTLLIEPKPQEPTKHQYDYDAATVY 635
G LLIEPKP+EPT+HQYDY Y
Sbjct: 183 GQLLIEPKPKEPTRHQYDYGELDSY 207
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/31 (54%), Positives = 21/31 (67%)
Frame = -3
Query: 509 SVDANRGDAQLGWDTDQFPNSVEENALVMYE 417
S+DAN G LGWDTDQFP +V+ +M E
Sbjct: 224 SIDANTGSPDLGWDTDQFPMNVKNCMFIMKE 254
Score = 41.1 bits (92), Expect = 9e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = -2
Query: 237 QRYSGWNSELGQQILKGQMSLADLAKYAQEHHLSPVHQSGRQEQLENLVNHYL 79
+RYS ++S +G +I KG +L +L + + P SG+QE+ E+++NHY+
Sbjct: 254 ERYSSFDSGIGSKIEKGLATLEELENFVMANG-EPQLLSGKQEKYESILNHYV 305
>SB_23613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 602
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = -1
Query: 199 NPERPNVTGRFSQICSGTSFVSGASEWSPGTTGKSGKPLSVRQITANCAVRW 44
N ERP+V S + SGT F SG W G S + +S R + A R+
Sbjct: 23 NLERPDVADDSSSLISGTVFASGRFAWL--ARGSSLEVISTRDGSRKAACRF 72
>SB_32451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 455 GTGRCPSPVAHRHGWRRQTEQAKRNGGGY 541
G R P R GW++ ++ R GGGY
Sbjct: 709 GYNRSPQQYGGRGGWQKDYQRGGRGGGGY 737
>SB_39527| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 320 IGAMDTMALALKIAARMIEDGEWINASRSVIP 225
I ++ T+ LA K+ D EW+N + VIP
Sbjct: 241 IASLSTLILARKLTHNTTTDTEWLNIADEVIP 272
>SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07)
Length = 507
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 564 QVTLSIMK*PPPLRLACSVCRRQPWRCATGLGHRPVPEQCGRECAGD 424
QV +S PPL+ C RQ RC L P+P+Q R +G+
Sbjct: 447 QVPISRFNTVPPLQFLCRFVIRQNIRC-DQLDQLPLPKQIIRNLSGN 492
>SB_56290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 486
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 516 CSVC-RRQPWRCATGLGHRPVPEQCGRECAGDV 421
C C R QP R T + P+P++C +CA D+
Sbjct: 153 CETCVRLQPLRKDTPVQSTPLPQRCWDKCALDL 185
>SB_43580| Best HMM Match : DNA_primase_S (HMM E-Value=5.9)
Length = 252
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 369 GIEVQTTGGETACFENFIHH-QRILFHTVRELVGVPAQLR--IATVGVDRPNRPSAMAVA 539
GI+V+ TG C++NF + R+ + +E + R T GV++ +R A V
Sbjct: 88 GIDVEVTGFHRGCYQNFTKNLDRLKNNNQKEPKPIHRSPRKLSGTFGVEKASREMAFTVV 147
Query: 540 I 542
+
Sbjct: 148 V 148
>SB_37717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 369 GIEVQTTGGETACFENFIHH-QRILFHTVRELVGVPAQLR--IATVGVDRPNRPSAMAVA 539
GI+V+ TG C++NF + R+ + +E + R T GV++ +R A V
Sbjct: 88 GIDVEVTGFHRGCYQNFTKNLDRLKNNNQKEPKPIHRSPRKLSGTFGVEKASREMAFTVV 147
Query: 540 I 542
+
Sbjct: 148 V 148
>SB_33630| Best HMM Match : DIRP (HMM E-Value=5.9)
Length = 175
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 369 GIEVQTTGGETACFENFIHH-QRILFHTVRELVGVPAQLR--IATVGVDRPNRPSAMAVA 539
GI+V+ TG C++NF + R+ + +E + R T GV++ +R A V
Sbjct: 88 GIDVEVTGFHRGCYQNFTKNLDRLKNNNQKEPKPIHRSPRKLSGTFGVEKASREMAFTVV 147
Query: 540 I 542
+
Sbjct: 148 V 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,268,757
Number of Sequences: 59808
Number of extensions: 594364
Number of successful extensions: 5107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5106
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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