Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021742
         (709 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ400853-1|CAC14138.1| 1201|Homo sapiens MUC4 protein splice var...    33   1.3  
DQ022562-1|AAY87461.1|  404|Homo sapiens pim-1 kinase 44 kDa iso...    31   3.1  

>AJ400853-1|CAC14138.1| 1201|Homo sapiens MUC4 protein splice variant
            sv16 protein.
          Length = 1201

 Score = 32.7 bits (71), Expect = 1.3
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 481  CASPRLASTDRTG-QAQWRWLFHDGKSDLPASRG 579
            C S R      T   AQWRWLF    +D+PAS G
Sbjct: 1164 CFSTRAVGCSGTWPSAQWRWLFRKQPTDVPASVG 1197


>DQ022562-1|AAY87461.1|  404|Homo sapiens pim-1 kinase 44 kDa
           isoform protein.
          Length = 404

 Score = 31.5 bits (68), Expect = 3.1
 Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +2

Query: 284 FSA-PVPS-YPSRRYDRKTDHIYQYFDDVLWHRSSDHRW*NRLL*EFHT-SPAHSLPHCS 454
           FSA P P+  PSRR  R+   +    D     R+S     N      H+ SP HSL H  
Sbjct: 13  FSALPDPAGAPSRRQSRQRPQLSS--DSPSAFRASRSHSRNATRSHSHSHSPRHSLRHSP 70

Query: 455 GTGRCPSPVAHR 490
           G+G C S   HR
Sbjct: 71  GSGSCGSSSGHR 82


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,678,217
Number of Sequences: 237096
Number of extensions: 2844773
Number of successful extensions: 6973
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6973
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)