Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021742
(709 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 31 0.61
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 31 0.61
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 31 0.61
Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81103-4|CAB03210.1| 686|Caenorhabditis elegans Hypothetical pr... 29 3.3
AY652943-1|AAT73710.1| 686|Caenorhabditis elegans guanylate cyc... 29 3.3
Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical pr... 28 5.7
AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate carb... 28 5.7
Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical pr... 28 7.5
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = -2
Query: 219 NSELGQQILKGQMSLADLAKYAQEHHLSPVHQSGRQEQLENLVNHYLFDK*RLTVQSVGP 40
+S++ Q +L G ++ +A A E S + + G +++ENL NH D +L + +
Sbjct: 417 DSQIIQVVLDGINNILKMAGEAAEQVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDN 476
Query: 39 VIGSD 25
SD
Sbjct: 477 FFSSD 481
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = -2
Query: 219 NSELGQQILKGQMSLADLAKYAQEHHLSPVHQSGRQEQLENLVNHYLFDK*RLTVQSVGP 40
+S++ Q +L G ++ +A A E S + + G +++ENL NH D +L + +
Sbjct: 417 DSQIIQVVLDGINNILKMAGEAAEQVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDN 476
Query: 39 VIGSD 25
SD
Sbjct: 477 FFSSD 481
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = -2
Query: 219 NSELGQQILKGQMSLADLAKYAQEHHLSPVHQSGRQEQLENLVNHYLFDK*RLTVQSVGP 40
+S++ Q +L G ++ +A A E S + + G +++ENL NH D +L + +
Sbjct: 326 DSQIIQVVLDGINNILKMAGEAAEQVTSEIEECGGLDKIENLQNHENEDIYKLAFEIIDN 385
Query: 39 VIGSD 25
SD
Sbjct: 386 FFSSD 390
>Z49072-5|CAA88885.2| 1109|Caenorhabditis elegans Hypothetical
protein C44F1.5 protein.
Length = 1109
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 449 CSG--TGRCPSPVAHRHGWRRQTEQAKRNGGGYF 544
C G T R S ++R GWR ++ + RNG G F
Sbjct: 889 CGGPSTSRANSRNSYRRGWRPSSKNSLRNGFGLF 922
>Z49067-4|CAA88853.2| 1109|Caenorhabditis elegans Hypothetical
protein C44F1.5 protein.
Length = 1109
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +2
Query: 449 CSG--TGRCPSPVAHRHGWRRQTEQAKRNGGGYF 544
C G T R S ++R GWR ++ + RNG G F
Sbjct: 889 CGGPSTSRANSRNSYRRGWRPSSKNSLRNGFGLF 922
>Z81103-4|CAB03210.1| 686|Caenorhabditis elegans Hypothetical
protein M04G12.3 protein.
Length = 686
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 168 LAKYAQEHHLSPVHQSGRQEQLENLVNHYLFD 73
+ KY ++ L + +SG + EN+VNHY D
Sbjct: 14 IRKYGEDVWLQVLERSGFENGKENIVNHYYSD 45
>AY652943-1|AAT73710.1| 686|Caenorhabditis elegans guanylate
cyclase-like protein protein.
Length = 686
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 168 LAKYAQEHHLSPVHQSGRQEQLENLVNHYLFD 73
+ KY ++ L + +SG + EN+VNHY D
Sbjct: 14 IRKYGEDVWLQVLERSGFENGKENIVNHYYSD 45
>Z81052-1|CAB02872.1| 1175|Caenorhabditis elegans Hypothetical
protein D2023.2 protein.
Length = 1175
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 437 NALVMYEIL-KAGGFTTGGLNFDAKVRRQSTDKYDLFY 327
N LV E + KAGG + + V +S DKYDL Y
Sbjct: 681 NLLVGMEAVGKAGGVVEAAIAYTGDVTDKSRDKYDLKY 718
>Z19154-9|CAA79552.2| 559|Caenorhabditis elegans Hypothetical
protein C40H1.1 protein.
Length = 559
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 452 SGTGRCPSPVAHRHGWRRQTEQAKRNGGG 538
SG + +PV HG RR TE K G G
Sbjct: 8 SGDFKTSAPVRSSHGHRRSTESKKSGGHG 36
>AF237467-1|AAF60326.1| 1175|Caenorhabditis elegans pyruvate
carboxylase protein.
Length = 1175
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 437 NALVMYEIL-KAGGFTTGGLNFDAKVRRQSTDKYDLFY 327
N LV E + KAGG + + V +S DKYDL Y
Sbjct: 681 NLLVGMEAVGKAGGVVEAAIAYTGDVTDKSRDKYDLKY 718
>Z78065-5|CAB01515.1| 954|Caenorhabditis elegans Hypothetical
protein T09E8.2 protein.
Length = 954
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 430 SAFSSTLFGNWSVSQPSCASPRLASTDRTGQAQW 531
S+F FG W + + + PRL ++D+ G+ ++
Sbjct: 271 SSFEINGFGEWRLLKNALPDPRLVASDKRGERKY 304
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,385,322
Number of Sequences: 27780
Number of extensions: 431827
Number of successful extensions: 1281
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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