Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021742
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57655.2 68418.m07204 xylose isomerase family protein contain...   105   2e-23
At1g58250.1 68414.m06624 SABRE, putative similar to SABRE (GI:71...    29   3.0  
At2g43320.1 68415.m05386 expressed protein                             29   4.0  
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-...    28   5.3  
At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein ...    28   7.0  
At1g76930.2 68414.m08956 proline-rich extensin-like family prote...    28   7.0  
At1g76930.1 68414.m08955 proline-rich extensin-like family prote...    28   7.0  
At2g31230.1 68415.m03814 ethylene-responsive factor, putative si...    27   9.2  

>At5g57655.2 68418.m07204 xylose isomerase family protein contains
           similarity to Xylose isomerase (EC 5.3.1.5)
           (Swiss-Prot:P22842) [Thermoanaerobacter ethanolicus]
          Length = 477

 Score =  105 bits (253), Expect = 2e-23
 Identities = 47/84 (55%), Positives = 59/84 (70%)
 Frame = -3

Query: 509 SVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLF 330
           ++DAN GDAQ GWDTDQF   V E  +VM  ++K GG   GG NFDAK+RR+STD  DLF
Sbjct: 335 NIDANTGDAQTGWDTDQFLTDVGEATMVMMSVIKNGGIAPGGFNFDAKLRRESTDVEDLF 394

Query: 329 YGHIGAMDTMALALKIAARMIEDG 258
             HI  MDTMA  L+ A +++E+G
Sbjct: 395 IAHISGMDTMARGLRNAVKILEEG 418



 Score =  105 bits (251), Expect = 4e-23
 Identities = 47/67 (70%), Positives = 54/67 (80%)
 Frame = -1

Query: 709 GTLLIEPKPQEPTKHQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAGHSFHHEIATA 530
           GTLLIEPKPQEPTKHQYD+DAAT   FL+++GL  E KLNIE NHATL+GH+ HHE+ TA
Sbjct: 268 GTLLIEPKPQEPTKHQYDWDAATAANFLRKYGLIDEFKLNIECNHATLSGHTCHHELETA 327

Query: 529 IALGLFG 509
              GL G
Sbjct: 328 RINGLLG 334



 Score = 35.1 bits (77), Expect = 0.046
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = -2

Query: 243 IAQRYSGWNSELGQQILKGQMSLADLAKYAQEHHLSPVHQSGRQEQLE 100
           + +RY+ W+SELG+QI +G+     L K A+E    P   S +QE  E
Sbjct: 424 VRKRYATWDSELGKQIEEGKADFEYLEKKAKEFG-EPKVSSAKQELAE 470


>At1g58250.1 68414.m06624 SABRE, putative similar to SABRE
           (GI:719291) [Arabidopsis thaliana]
          Length = 2603

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 515 VRSVDANRGDAQLGWDTDQFPNSVEENA 432
           VR+V+   GD  L +D D FP S + +A
Sbjct: 244 VRNVEVTSGDVILNFDEDSFPKSKQSSA 271


>At2g43320.1 68415.m05386 expressed protein
          Length = 351

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 234 RYSGWNSE-LGQQILKGQMSLADLAKYAQEHHLSPVHQSGRQEQLENLV 91
           RYSG N + LG Q+ KG++S+AD+   +     +P+   G  +  E+ V
Sbjct: 49  RYSGENLDALGLQVFKGKVSVADIIGLSGS-ETAPLKNEGSLKSWESSV 96


>At5g53430.1 68418.m06640 PHD finger family protein / SET
           domain-containing protein (TX5) contains Pfam domain,
           PF00628: PHD-finger and PF00856: SET domain; identical
           to cDNA  trithorax 5 (TX5) partial cds GI:16118406
          Length = 1043

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 382 RPPVVKPPALRISYITSAFSSTLFGNWSVSQPSCASPR 495
           RPP+VK    R+  + S F+ ++  NW     S    R
Sbjct: 95  RPPLVKTSRGRVQVLPSRFNDSVIENWRKDNKSSGEER 132


>At3g22180.1 68416.m02799 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 706

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +2

Query: 290 APVPSYPS---RRYDRKTDHIYQYFDDVLWHRSSD 385
           AP+P  P+    R+   + H++  FDD + HR +D
Sbjct: 510 APLPQNPTIVGNRFTATSHHMHSTFDDKVLHRGND 544


>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 256

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 290 APVPSYPSRRYDRKTDHIYQYFDDVLWHRSSDHRW*NRLL*EFHTSPAH 436
           +P PSY +  + R T H+ Q +  +  HR + H      L + +T+P H
Sbjct: 158 SPPPSYTTLHHHRFTTHLLQSYTTLHHHRFTTH------LLQLYTTPHH 200


>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
           contains extensin-like region, Pfam:PF04554
          Length = 293

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +2

Query: 290 APVPSYPSRRYDRKTDHIYQYFDDVLWHRSSDHRW*NRLL*EFHTSPAH 436
           +P PSY +  + R T H+ Q +  +  HR + H      L + +T+P H
Sbjct: 158 SPPPSYTTLHHHRFTTHLLQSYTTLHHHRFTTH------LLQLYTTPHH 200


>At2g31230.1 68415.m03814 ethylene-responsive factor, putative
           similar to ethylene response factor 1 GB:AAD03544
           GI:4128208 from [Arabidopsis thaliana]
          Length = 243

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 24/86 (27%), Positives = 38/86 (44%)
 Frame = -3

Query: 452 NSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAAR 273
           +  EE AL   +   A   +   LNF  +V R+S  K +    H G    MAL  K + R
Sbjct: 117 DKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKMENVNLHDGGSPVMALKRKHSLR 176

Query: 272 MIEDGEWINASRSVIPAGIANWASKS 195
               G+  ++S S   +  ++ +S S
Sbjct: 177 NRPRGKKRSSSSSSSSSNSSSCSSSS 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,432,075
Number of Sequences: 28952
Number of extensions: 400301
Number of successful extensions: 1093
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)