Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021741
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 30 0.29
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 30 0.38
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.67
SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual 28 1.2
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.6
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce... 28 1.6
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 4.7
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 26 4.7
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 26 4.7
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 4.7
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 26 6.3
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 6.3
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 25 8.3
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 25 8.3
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 30.3 bits (65), Expect = 0.29
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 307 SSDVLDVEPSIAPXAQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIG-DNCLSTP 480
SSDVL ++ S AQ E P VE +AEDEM + + S A NEE + D +S P
Sbjct: 853 SSDVLPMKGS----AQREVPDVEDA-IEAEDEMLEEASDSEAANEEDIDLSKDKFISVP 906
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 29.9 bits (64), Expect = 0.38
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 304 SSSDVLDVEPSIAPXAQEEHPVVEQGNADAEDEMDIDETAS-GAMNEESAYIG 459
SS+D+ +E +IAP HP + NA + +D T S G + ES +G
Sbjct: 230 SSNDITVIESTIAPQQATTHPPSQPKNAVSVPIPKMDSTDSKGELPSESLVLG 282
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 29.1 bits (62), Expect = 0.67
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +1
Query: 262 TTEPEELAANGGPTSSSDVLDVEPSIAPXAQEEHPV-VEQGNADAEDEMDID-ETASGAM 435
TT+P NG + S LDVE + P + PV E N+ +D D +TAS +
Sbjct: 152 TTQPSVSGGNGSTSQSPPSLDVEQN-KPFSISNEPVEQETENSSTKDLQVYDFQTASEHL 210
Query: 436 NEES 447
E+S
Sbjct: 211 PEQS 214
>SPCC1223.09 |||uricase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 296
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 400 EMDIDETASGAMNEESAYIGDNCLSTPADTEENS 501
EMD+ +G + EES DN + P DT++N+
Sbjct: 35 EMDVQSLLTGEL-EESYTKADNSIVVPTDTQKNT 67
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 373 EQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADT 489
E+G+AD EDE D D S + + C STP T
Sbjct: 237 EEGSADEEDEEDSDVELSESSLSDDEDSPLRCPSTPVQT 275
>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 398
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 305 LVGPPFAASSSGSVVTSHLLNYCQANHR*YRQPGYPGY 192
++G P SSG LL+Y H +PG+ GY
Sbjct: 84 VLGAPSVVYSSGLAAIYGLLSYLNPKHIAVHKPGFGGY 121
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 510 DQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTD 629
D +N + + E +++E D +E+ + ISS ++P D
Sbjct: 325 DSNNSAELAKETKEEDDSENSVDKKENEEDIISSTMMPQD 364
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.2 bits (55), Expect = 4.7
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Frame = +3
Query: 507 NDQDNQLDSMIKEPE----SEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDD 674
ND ++ PE S EA G G + + D S S + +S + + + S D
Sbjct: 80 NDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSES----ESSSEDNDSSSSSSDS 135
Query: 675 ESSTMDED 698
ES + ED
Sbjct: 136 ESESSSED 143
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +3
Query: 495 EFAPNDQDNQLDSMIKEPESEEAEGLGDAEESPDQS---ISSAILPTDSGVGEVEGAPSV 665
E + +DN S + ESE + D+ S S SS + S E S
Sbjct: 118 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSS 177
Query: 666 QDDESSTMDED 698
+D++SS+ D
Sbjct: 178 EDNDSSSSSSD 188
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +3
Query: 495 EFAPNDQDNQLDSMIKEPESEEAEGLGDAEESPDQS---ISSAILPTDSGVGEVEGAPSV 665
E + +DN S + ESE + D+ S S SS + S E S
Sbjct: 172 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSS 231
Query: 666 QDDESSTMDED 698
+D++SS+ D
Sbjct: 232 EDNDSSSSSSD 242
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 26.2 bits (55), Expect = 4.7
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +1
Query: 256 DVTTEPEELAAN---GGPTSSSDVLDVEPSIAPXAQEEHPVVEQGNADAEDEMDIDETA 423
D+ E +E A + SS D PSIA ++ PV +++ +EMD+ A
Sbjct: 215 DLDKELDEYAMSFHAASTVSSHSSQDFTPSIANAHEKNEPVAPSKDSNLTEEMDLQMEA 273
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/67 (26%), Positives = 32/67 (47%)
Frame = +3
Query: 492 REFAPNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQD 671
+E AP +++ +K +++ +E L + D S LP+ S E+ + QD
Sbjct: 651 QEVAPLVSSKKMNENLKAAKNQSSESLTSFKGHTD----SEDLPSGSMSNEISSNSTKQD 706
Query: 672 DESSTMD 692
SS+MD
Sbjct: 707 VSSSSMD 713
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 25.8 bits (54), Expect = 6.3
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +3
Query: 540 KEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGA----PSVQDDESSTMDEDIAE 707
K + A+ L +A++ Q++ P GEVE A P + DE TM+E++AE
Sbjct: 111 KRLAGKRAQELQEAQKLIAQNVPQFTEPE----GEVETAEVQEPQIVSDEEYTMEEEVAE 166
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 373 EQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTE 492
EQG+ D EDE + AS A E+ I + L++ + E
Sbjct: 111 EQGHVDEEDEERCRKMASDASEEKDRKIEEGELTSEEEKE 150
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = -3
Query: 417 FIYVHFIFSICITLFNYRMLFLSXRCNRRLYVQNIAAASWTTIRS 283
F+ +H+I+ I +T+ +LF + Y+ + AS T ++
Sbjct: 19 FLAIHYIYIISLTIIASILLFTGGTTTKIKYIDALFLASSATTQT 63
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.4 bits (53), Expect = 8.3
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Frame = +1
Query: 271 PEELAANG-GPTSSSDVLDVEPSIAPXAQEE-HPVVEQGNADAEDEMDIDETASGAMNEE 444
P +A G G T + D+ P+ +QE +EQ ++ E+E DID NE
Sbjct: 15 PNYVAGLGRGATGFTTRSDLGPAQELPSQESIKAAIEQRKSEIEEEEDIDPRYQDPDNEV 74
Query: 445 SAYIGDNCLSTPADTE-ENSPQMIKTIN*IL**RSQSQKKQR 567
+ + + P D E E + ++ +++ L R +SQ++++
Sbjct: 75 ALF-----ATAPYDHEDEEADKIYQSVEEHLSKRRKSQREKQ 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,561,858
Number of Sequences: 5004
Number of extensions: 47740
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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