Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021741
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8) 36 0.033
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 33 0.23
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_29621| Best HMM Match : Halo_GVPC (HMM E-Value=5.3) 32 0.41
SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0) 32 0.41
SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6) 32 0.41
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001) 30 1.7
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 30 1.7
SB_7554| Best HMM Match : zf-CXXC (HMM E-Value=6.5e-08) 30 1.7
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 30 2.2
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 30 2.2
SB_13876| Best HMM Match : PEARLI-4 (HMM E-Value=4.5) 29 2.9
SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1) 29 3.8
SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_37659| Best HMM Match : Motilin_ghrelin (HMM E-Value=3.2) 29 5.0
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058) 29 5.0
SB_47531| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 28 6.7
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3) 28 6.7
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_16643| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2) 28 6.7
SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056) 28 8.8
SB_59643| Best HMM Match : DUF1610 (HMM E-Value=3.3) 28 8.8
SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9) 28 8.8
>SB_41173| Best HMM Match : Sas10_Utp3 (HMM E-Value=2.8)
Length = 405
Score = 35.9 bits (79), Expect = 0.033
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +3
Query: 504 PNDQDNQLDSMIKEP--ESEEAEGLGDAEES-PDQSISSAILPTDSGVGEVEGAPSVQDD 674
P Q+N +DS + EP +++E+E D + + P + + + DSGV E E +P+ QD
Sbjct: 244 PEGQENPVDSQLSEPAEQAQESEKADDKKSTEPAEPVEQS---QDSGVAEAE-SPAEQDS 299
Query: 675 ESST 686
E T
Sbjct: 300 EEGT 303
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/75 (26%), Positives = 32/75 (42%)
Frame = +1
Query: 268 EPEELAANGGPTSSSDVLDVEPSIAPXAQEEHPVVEQGNADAEDEMDIDETASGAMNEES 447
+P AAN + D +D + QGN D+E++ + +TAS NEE+
Sbjct: 8 QPSNGAANTIENTQEDTVDGNIGEEENPVKSEGAENQGNLDSEEKTEDKQTASDLTNEEN 67
Query: 448 AYIGDNCLSTPADTE 492
A + P + E
Sbjct: 68 AESKEITADQPTNNE 82
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 367 VVEQGNADAEDEMDIDETASGAMNEESAYIGD 462
VVEQ ++D E + D ++TASG +NEES +G+
Sbjct: 2948 VVEQTSSDKETDGDQEDTASG-INEESEVLGE 2978
>SB_29621| Best HMM Match : Halo_GVPC (HMM E-Value=5.3)
Length = 471
Score = 32.3 bits (70), Expect = 0.41
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 367 VVEQGNADAEDEMDIDETASGAMNEESAYIGD 462
VVEQ ++D E + D ++TASG +NEES +G+
Sbjct: 174 VVEQTSSDKETDGDQEDTASG-INEESEVLGE 204
>SB_22851| Best HMM Match : Sad1_UNC (HMM E-Value=0)
Length = 1705
Score = 32.3 bits (70), Expect = 0.41
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 531 SMIKEPESEEAEGLGDAEESPDQSISSAILPTD--SGVGEVEGAPSVQDDESSTMDEDIA 704
SM++E E E +G D E + ILP+D + VG+ G P++ S T+ +
Sbjct: 709 SMVEELEEHEGDGQDDQESVDQDDETVQILPSDPAAKVGDQTGKPNILATVSDTLISMVK 768
Query: 705 E 707
E
Sbjct: 769 E 769
>SB_22178| Best HMM Match : Involucrin2 (HMM E-Value=2.6)
Length = 311
Score = 32.3 bits (70), Expect = 0.41
Identities = 22/72 (30%), Positives = 34/72 (47%)
Frame = +3
Query: 492 REFAPNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQD 671
RE A ++ D L +E E L EE+ D+ + A + GE++GAP Q+
Sbjct: 116 REEASSESDVVLGQQ-EEVSGESDVSLDQQEEASDE-LDGAPDQQEGASGELDGAPDQQE 173
Query: 672 DESSTMDEDIAE 707
+ +DE I E
Sbjct: 174 GTAGELDEAIEE 185
>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
Length = 909
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +3
Query: 516 DNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESSTMDE 695
D ++++ + +P+ DA + +S+ P G + QDD SST DE
Sbjct: 790 DGRVENSVGKPQESVPNSDQDASIPTAKQTTSSNTPYIQDTGSIHVTGVCQDDSSSTSDE 849
Query: 696 D 698
D
Sbjct: 850 D 850
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 30.3 bits (65), Expect = 1.7
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Frame = +3
Query: 504 PNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVE---GAPSVQDD 674
PND D+ +S+ ++ E E E AEE + + P+ V E E G+P D
Sbjct: 728 PNDVDDPEESIDEDDEEENGEDTKHAEEDGSRIQEPSEEPSPRPVSETEATNGSPEDYSD 787
Query: 675 ESSTMDEDIAE 707
E + D E
Sbjct: 788 EPDMENTDKPE 798
>SB_7554| Best HMM Match : zf-CXXC (HMM E-Value=6.5e-08)
Length = 343
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +3
Query: 540 KEPESEEAEGLGDAEESPDQ-SISSAILPTDSGVGEVEGAPSVQDDES-STMDEDIAEGG 713
K P+S+E EG+ D+ E ++ + + TD V +P +DD++ T+ ++E
Sbjct: 188 KTPDSDENEGMSDSNERENKPQPFNTHMDTDEEVESKPASPECKDDKNEQTLPSPVSEML 247
Query: 714 VAS 722
VA+
Sbjct: 248 VAT 250
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +3
Query: 540 KEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESSTMDEDIAE 707
+E S E++ D +E + A + GE++GAP Q+ + +DE I E
Sbjct: 1081 EEIASGESDVSLDQQEEASDELDGAPDQQEGASGELDGAPDQQEGTAGELDEAIEE 1136
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = +3
Query: 495 EFAPNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDD 674
E AP+ DN + M+ E E+ AE DA+ + + L + V V+ D
Sbjct: 2782 ESAPDKMDNGQEEMLDEIEAATAEKTADADVFKTKELPVEELQEEVEVEHVDDKILSDHD 2841
Query: 675 ESSTMDEDI 701
+ + EDI
Sbjct: 2842 DKTPASEDI 2850
>SB_13876| Best HMM Match : PEARLI-4 (HMM E-Value=4.5)
Length = 311
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 507 NDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESS 683
+D D +D + E SEE E + A ES + I +A + S VG V + S ++ S
Sbjct: 174 DDNDGDMDDIRGELFSEEREDINAASESVSEIIVTATV--SSSVGTVTSSSSPEESTKS 230
>SB_36033| Best HMM Match : ATP-synt_B (HMM E-Value=1)
Length = 550
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +3
Query: 504 PNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVG 641
P + + + +S++ PE +++G GD E+ + +ISS ++ + G
Sbjct: 492 PVEWEIEEESVLTSPECSDSDGSGDDEQPQEPAISSPLVAAVAEAG 537
>SB_23023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 505
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 167 GAEVSPQADNQDNQVADTIDDLPDNNSASA 256
G PQA ++ NQ+ +T DD+ NS A
Sbjct: 118 GTGNDPQAQSEQNQIQETSDDIGTENSIEA 147
>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1126
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 507 NDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESS 683
+D D +D + E SEE E + A ES + I +A + S VG V + S ++ S
Sbjct: 508 DDNDGDMDDIRGELFSEEKEDVNAASESVSEIIVTATV--SSSVGTVTSSSSPEESTKS 564
>SB_37659| Best HMM Match : Motilin_ghrelin (HMM E-Value=3.2)
Length = 468
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 528 DSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESST--MDEDI 701
+S + E E E ++EES +S +SA+ S + + ESST ++ D
Sbjct: 324 ESEEESEEYSEEESEEESEESDSESFASALEEPGSDTDSTSYQTARNNIESSTTSLEYDT 383
Query: 702 AEGG 713
AEGG
Sbjct: 384 AEGG 387
>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
Length = 1299
Score = 28.7 bits (61), Expect = 5.0
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Frame = +3
Query: 504 PNDQDNQLDSMIKEPESEEAEGLGDAEESP----DQSISSAILPT------DSGVGEVEG 653
PNDQ+ ++ P E EG GD + + DQ +S T G G +G
Sbjct: 262 PNDQEGSGNTDGTAPVQNEQEGSGDTDGTTPVQNDQEVSGNTYDTAPVQNEQEGSGNTDG 321
Query: 654 APSVQDDESSTMDED 698
VQ+D+ +D
Sbjct: 322 TAPVQNDQEGFDSKD 336
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 504 PNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTD-SGVGEVEGAPSVQDDES 680
PNDQ+ ++ + P + E +G G+ + + +P D G G +G VQ+++
Sbjct: 230 PNDQEGSGNTEGRAPVANEQKGSGNID-------GTTPVPNDQEGSGNTDGTAPVQNEQE 282
Query: 681 STMDED 698
+ D D
Sbjct: 283 GSGDTD 288
>SB_47531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 504 PNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSG 635
P D D Q S I P++++++ DQS +++I+P DSG
Sbjct: 171 PPDAD-QSKSTIIPPDADQSKSTSIIPPDADQSKNTSIIPPDSG 213
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 504 PNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTD-SGVGEVEGAPSVQDDES 680
PNDQD ++ P + + EG G+ + +A +P D G G EG + +D+
Sbjct: 305 PNDQDVSGNTDGTAPVANDQEGSGNTD-------GTAPIPNDQEGAGNTEGTAPIPNDQK 357
Query: 681 STMDED 698
+ + D
Sbjct: 358 GSGNTD 363
>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
Length = 375
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -1
Query: 374 STTGCSS*AXGAIEGSTSKTSLLLVGPPFAASSSGSVVTSHLLNYCQANH 225
S++ +S + A GST T+ + PP + V S L++YCQ N+
Sbjct: 235 SSSSTTSSSAKANTGSTVPTARQVSAPPKPSDEGIPEVVSSLVSYCQDNN 284
>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +1
Query: 268 EPEELAANGGPTSSSDVLDVEPSIAPXAQEEHPVVEQGNADAEDEMDIDETASGAMNEES 447
E E A +G S +D L+ S + P E+G D +E + E ++E+
Sbjct: 223 EDEPTAPDGDDDSLNDGLEKSDSENEMDETIEPEKEEGRPDEPEEEEPFEETLYVPDKET 282
Query: 448 AYIGDNCLSTPADTEEN 498
Y G+ +T +EN
Sbjct: 283 EYFGEAGEATEEIEDEN 299
>SB_16643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Frame = +3
Query: 549 ESEEAEGLGDAEESPDQSISSAI-LPTDSGVGEVEGAPSVQDDESSTMDEDIAEGG 713
+++ +GLGDA SP++ +++ D+ G A +V DDE ++++D EGG
Sbjct: 256 QTKYRKGLGDA--SPNKKKQASVDRDDDADQGAAPDAAAV-DDEDDSLEDDGDEGG 308
>SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)
Length = 623
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = +3
Query: 471 FYTCRY*REFAPNDQDNQLDSMIKEPESEE---AEGLGDA-EESPDQSISSAILPTDSGV 638
+Y C F QD ++DS I ESE + +GD E + S + T +
Sbjct: 88 YYVCALRAFFQTRIQDAKMDSEIVSKESERKKLSPEIGDGIREVASEENSEKSIETSAAS 147
Query: 639 GEVEGAPSVQDDESSTMDED 698
+PS ++ S+ D+D
Sbjct: 148 ETATKSPSTENTGSTKSDKD 167
>SB_24596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1907
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 122 TKMESDPATHSDSHDGAEVSPQADNQDNQVADTIDDLPDNN 244
T D T SD DG + D+ D+ D DD D+N
Sbjct: 1436 TSQGQDSLTKSDDDDGGDGGDDDDDDDDDDDDDDDDDDDDN 1476
>SB_4001| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0056)
Length = 508
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +3
Query: 510 DQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESSTM 689
D D+ DS + + +G D++ D D+G G+V+G DD+ S
Sbjct: 413 DGDDDSDSDNDDDSDGDGDGDYDSDGDGDYDSDGDGDDDDNGDGDVDGGGDGDDDDDSDG 472
Query: 690 DED 698
D D
Sbjct: 473 DGD 475
>SB_59643| Best HMM Match : DUF1610 (HMM E-Value=3.3)
Length = 363
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +3
Query: 507 NDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESST 686
+D D+ +D + + ++ + GD +E D+ D G G+ + V DD
Sbjct: 62 DDNDDDVDDNVDDDVDDDNDDDGDEDEDGDED--------DDGDGDEDDDDDVDDDGDED 113
Query: 687 MDEDIAEGG 713
D D+ + G
Sbjct: 114 DDGDVDDDG 122
>SB_4347| Best HMM Match : CXCXC (HMM E-Value=7.9)
Length = 295
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 126 KWNRTLLLTAILTMARKCRLKPITRITRLPILSMICLTII 245
K TLLL LT+ K L P+ ++T P+L + LT++
Sbjct: 102 KLTLTLLLKLALTLLLKLTLTPLLKLTLTPLLK-LTLTLL 140
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,249,381
Number of Sequences: 59808
Number of extensions: 369360
Number of successful extensions: 1609
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -