Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021741
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            23   2.2  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.9  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   8.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.9  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 122 TKMESDPATHSDSHDGAEVSPQADNQ 199
           +KME DPAT  D+        QADNQ
Sbjct: 83  SKMEIDPATQKDA---GYYECQADNQ 105


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 138 TLLLTAILTMARKCRLKPITRITRLPILSMICLTII 245
           TLL  A  T      L P++    + I + +CLT +
Sbjct: 280 TLLTMATQTSGINASLPPVSYTKAIDIWTGVCLTFV 315


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 138 TLLLTAILTMARKCRLKPITRITRLPILSMICLTII 245
           TLL  A  T      L P++    + I + +CLT +
Sbjct: 280 TLLTMATQTSGINASLPPVSYTKAIDIWTGVCLTFV 315


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 621 PTDSGVGEVEGAPSVQDDESSTM 689
           P DSGV +VE + S   +E + +
Sbjct: 245 PADSGVSDVESSTSSGGNEDANL 267


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 297 TTIRSKFLRLSGHIALAELLSGKSSIVSAT 208
           T+I    L+     ALA+  SG+ SI+ AT
Sbjct: 479 TSIHGDRLQRQREEALADFKSGRMSILVAT 508


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 250 KCDVTTEPEELAANGGPTSSSDVLDVEPSIAPXAQEEHPVVEQGN 384
           K DVTT     A + G  +   V DVE  +A         + Q N
Sbjct: 117 KPDVTTVELVDATDPGEHNGDTVTDVEAGLASRTNPLDDSISQAN 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,965
Number of Sequences: 438
Number of extensions: 3007
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)