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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021741
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39440.1 68415.m04841 expressed protein                             32   0.33 
At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain...    27   0.95 
At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain...    27   0.95 
At5g40450.1 68418.m04905 expressed protein                             30   1.8  
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar...    30   1.8  
At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1) iden...    29   2.4  
At5g04460.1 68418.m00443 expressed protein                             29   3.1  
At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati...    29   3.1  
At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain...    29   4.1  
At3g09170.1 68416.m01088 Ulp1 protease family protein contains P...    29   4.1  
At3g04820.1 68416.m00522 expressed protein contains PFam profile...    29   4.1  
At1g63200.1 68414.m07142 hypothetical protein                          29   4.1  
At1g34610.1 68414.m04301 Ulp1 protease family protein contains P...    29   4.1  
At3g50690.1 68416.m05546 leucine-rich repeat family protein            28   5.5  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    28   5.5  
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff...    28   7.2  
At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein s...    27   9.5  
At2g35075.1 68415.m04303 hypothetical protein                          27   9.5  
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ...    27   9.5  

>At2g39440.1 68415.m04841 expressed protein
          Length = 773

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 507 NDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQD 671
           +D+++ LDS IKE +  E  G  D +ES D S    IL  +  +G+    P  +D
Sbjct: 592 SDEESALDSAIKESKESEPIGFLDTQESRDSSYIDDIL-AEVLLGDKNCVPGKRD 645


>At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 26.6 bits (56), Expect(2) = 0.95
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 630 SGVGEVEGAPSVQDDESSTMDEDIAEGGVAS 722
           +GV E +G  S  DD SST   D  + GVA+
Sbjct: 558 NGVAERKGL-STMDDSSSTCSNDSIQSGVAN 587



 Score = 22.6 bits (46), Expect(2) = 0.95
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 537 IKEPESEEAEGLGDAEESPDQSISSA-ILPTDS 632
           I E  +E+ + LGD  +  D   SSA IL  DS
Sbjct: 489 IAESSAEKPDTLGDVSDVSDSVDSSAEILQLDS 521


>At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471; contains Pfam profile PF00917: MATH domain
          Length = 1055

 Score = 26.6 bits (56), Expect(2) = 0.95
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 630 SGVGEVEGAPSVQDDESSTMDEDIAEGGVAS 722
           +GV E +G  S  DD SST   D  + GVA+
Sbjct: 558 NGVAERKGL-STMDDSSSTCSNDSIQSGVAN 587



 Score = 22.6 bits (46), Expect(2) = 0.95
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 537 IKEPESEEAEGLGDAEESPDQSISSA-ILPTDS 632
           I E  +E+ + LGD  +  D   SSA IL  DS
Sbjct: 489 IAESSAEKPDTLGDVSDVSDSVDSSAEILQLDS 521


>At5g40450.1 68418.m04905 expressed protein
          Length = 2910

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +3

Query: 495  EFAPNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDD 674
            E A ND  +   SMIKEP  +E +   D  ES ++   S IL      G+  G      +
Sbjct: 2227 ERAINDSASSEVSMIKEPADQEEKKGDDVVESNEKDFVSDILEAKRLHGDKSGEAEKIKE 2286

Query: 675  ES 680
            ES
Sbjct: 2287 ES 2288



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
 Frame = +1

Query: 247  SKCDVTTEPEELAANGGPTSSSDVLDVEPSIAPXAQEEHPVVEQGNADAEDEMD--IDET 420
            +K +  + PE +     P     V+D  P   P  +    V+E+ +   +++++   D  
Sbjct: 908  TKEETVSVPESIELEEQPQEERSVIDPTPLQKPTLESPSEVLEESSKTVDEKIEEKTDSI 967

Query: 421  ASGAMNEESAYIGDNCLSTPADTEENSP 504
              G + +E   + D    TP   E + P
Sbjct: 968  ELGEIAQEERSVTD---LTPLQEESSQP 992


>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to
           gb|U06698 neuronal kinesin heavy chain from Homo sapiens
           and contains a PF|00225 Kinesin motor domain. EST
           gb|AA042507 comes from this gene; identical to cDNA
           MKRP1 mRNA for kinesin-related protein,  GI:16902291,
           kinesin-related protein [Arabidopsis thaliana]
           GI:16902292
          Length = 890

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 504 PNDQDNQLDSMIKEPESEEAEG-LGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDES 680
           P D ++ LD M K+    +  G LG  +      ++   LPTD    +  G+PS     +
Sbjct: 524 PRDGNSSLDEMTKDRRKNKTRGMLGWLKLKKSDGVAGT-LPTDGNQSQASGSPSSSSKYT 582

Query: 681 ST 686
            T
Sbjct: 583 QT 584


>At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1)
           identical to ethylene-insensitive3-like1 GI:2224927 from
           [Arabidopsis thaliana]
          Length = 584

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +1

Query: 304 SSSDVLDVEPSIAPXAQEEHPVVEQGNADAEDEMDIDE 417
           SSS  LDV P   P A++E PVVE  +   +DEMD+DE
Sbjct: 17  SSSTSLDVCP--LPQAEQE-PVVEDVDY-TDDEMDVDE 50


>At5g04460.1 68418.m00443 expressed protein
          Length = 863

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = +3

Query: 432 YERGISVYRR*-----LSFYTCRY*REFAPNDQDNQLDSMIKEPESEEAEGLGDAEESPD 596
           +ERG+  + R      +SF +C       P D+DN+ D +++     E EG   AE S  
Sbjct: 21  FERGLEEFMRGHLDECISFGSCSSVHN--PEDEDNEDDQLVRRRRRSELEGDNLAESSAA 78

Query: 597 QSISSAIL 620
           +   S IL
Sbjct: 79  RRRQSQIL 86


>At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative
           (COX6b) nearly identical to subunit 6b of cytochrome c
           oxidase [Arabidopsis thaliana] GI:6518353
          Length = 191

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +1

Query: 349 AQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQ 507
           A+EE PV E+  +  E++ +    ++   +E  A   DN   TPA  EEN+ +
Sbjct: 52  AKEESPV-EEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDE 103


>At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing
            protein similar to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1377

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +1

Query: 295  GPTSSSDVLDVEPSIAPXAQEEHPVVEQG--NADAEDEMDIDETASGAMNEESAYIGDNC 468
            G +  + V+  +  +   A+ EH V  +G  + DA+DE   D + +G     +  IGD C
Sbjct: 976  GDSEDNFVVYEDRELKATAKTEHSVEAEGENDEDADDEDGDDASEAGEDASGTESIGDEC 1035

Query: 469  LSTPADTEE 495
                   EE
Sbjct: 1036 SQDDNGVEE 1044


>At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 1000

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +1

Query: 370 VEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSP 504
           V Q   D +DEMD+D +   A   E    G+       +  ++ P
Sbjct: 365 VNQAKGDGDDEMDVDGSGVAAEEREECAAGEGVDGLDGEANKDGP 409


>At3g04820.1 68416.m00522 expressed protein contains PFam profile
           PF01142: Uncharacterized protein family UPF0024;
           expression supported by MPSS
          Length = 747

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 546 PESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESSTMDED 698
           P ++  E +G  EE  D+S+ S   P DSG   ++      + E  T + D
Sbjct: 640 PMNKPVEKVGSTEEIEDESMKSDTNPHDSGETNLKDQTDSNEAEKDTGNPD 690


>At1g63200.1 68414.m07142 hypothetical protein
          Length = 216

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = +1

Query: 265 TEPEELAANGGPTSSSDVLDVEPSIAPXAQEEHPVVEQGNADAEDEMDIDETASGAMNEE 444
           T  EELA      ++SD  D++ S        HP +   +  A+DE D  E    ++ +E
Sbjct: 43  TPEEELALMTKQVNASDGFDIDFSSFLCVFNYHPAILHSDQFADDEFDTTEDLLKSLAQE 102

Query: 445 S 447
           +
Sbjct: 103 A 103


>At1g34610.1 68414.m04301 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 997

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +1

Query: 370 VEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSP 504
           V Q   D +DEMD+D +   A   E    G+       +  ++ P
Sbjct: 365 VNQAKGDGDDEMDVDGSGVAAEEREECAAGEGVDGLDGEANKDGP 409


>At3g50690.1 68416.m05546 leucine-rich repeat family protein 
          Length = 447

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +3

Query: 507 NDQDNQLDSMIKEPESE-EAEGLGDAEESPDQSISSAILPTDSGVGE-VEGAPSVQDDES 680
           +D+D++ D   +E E E + E  G  E   D+   +  +   +G  E V+G   V +DE 
Sbjct: 165 DDEDDEEDEEDEEEEEEGDEEDPGSGEIDGDERAEAPRM--SNGHSERVDGVVDVDEDEE 222

Query: 681 STMDEDIAE 707
           S  ++D +E
Sbjct: 223 SDAEDDESE 231



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +3

Query: 519 NQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDE 677
           N ++ + ++ + +E E + D    PDQS++S+  P      + +G     DDE
Sbjct: 393 NDIEPINEDNDPDEEEEVEDDLPIPDQSLASSSRPKRKRDDDDDGEDDDDDDE 445


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein similar
            to chloroplast membrane protein (ALBINO3) (GI:3927828)
            [Arabidopsis thaliana]
          Length = 1013

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +3

Query: 540  KEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESS 683
            K  E +E        E   ++  SA+  T  G   V G PS+Q DE++
Sbjct: 945  KAHEQDEKSDTAIVAEDDKKTELSAVDETSDGTVAVNGKPSIQKDETT 992


>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 1939

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 513 QDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILP 623
           QDN +D  + E E E  + L    +S    I+  +LP
Sbjct: 656 QDNMMDLTVDETEKESLKNLPSLHKSHQPDINKTLLP 692


>At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein
           similar to chitinase GI:17799 from [Brassica napus];
           contains Pfam profiles PF00182: Chitinase class I,
           PF00187: Chitin recognition protein
          Length = 281

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 79  INKYTICAVCTLLDHENGIGPCYSQRFSRWRGSVASSR*PG*PGCRYY 222
           + K  I A+     HE+G   CY +  +R R    S+  P  PG  YY
Sbjct: 133 VAKREIAAMLAQFSHESG-SFCYKEEIARGRYCSPSTTYPCQPGKNYY 179


>At2g35075.1 68415.m04303 hypothetical protein
          Length = 485

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
 Frame = -3

Query: 342 CNRRLYVQNIAAASWTTIRSKFLRLSGHIALAELLSGKSSIVS----ATWLSWLSA 187
           CNRR+ +Q +  +  T IR  + RL   IA++     K S VS    +  LSWLS+
Sbjct: 233 CNRRVAIQCVDFSKQTIIRDVW-RLLDSIAVSLASQQKKSSVSLKEVSPSLSWLSS 287


>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
           (PRC2B) (PRS1) identical to GB:AAC32063 from
           [Arabidopsis thaliana] (Genetics 149 (2), 677-692
           (1998)); identical to cDNA proteasome subunit prc2b
           GI:2511585
          Length = 277

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +3

Query: 525 LDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAP 659
           +D+  K PE EE  G G+AE  P+ +  +A      G G+ + AP
Sbjct: 232 IDTFEKVPEEEEDAGEGEAE--PEAAPGAAGTGEQGGSGDQDVAP 274


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,331,988
Number of Sequences: 28952
Number of extensions: 252058
Number of successful extensions: 1014
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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