BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV021741 (722 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g39440.1 68415.m04841 expressed protein 32 0.33 At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain... 27 0.95 At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain... 27 0.95 At5g40450.1 68418.m04905 expressed protein 30 1.8 At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar... 30 1.8 At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1) iden... 29 2.4 At5g04460.1 68418.m00443 expressed protein 29 3.1 At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putati... 29 3.1 At5g15020.1 68418.m01761 paired amphipathic helix repeat-contain... 29 4.1 At3g09170.1 68416.m01088 Ulp1 protease family protein contains P... 29 4.1 At3g04820.1 68416.m00522 expressed protein contains PFam profile... 29 4.1 At1g63200.1 68414.m07142 hypothetical protein 29 4.1 At1g34610.1 68414.m04301 Ulp1 protease family protein contains P... 29 4.1 At3g50690.1 68416.m05546 leucine-rich repeat family protein 28 5.5 At1g24490.1 68414.m03084 60 kDa inner membrane family protein si... 28 5.5 At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 28 7.2 At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein s... 27 9.5 At2g35075.1 68415.m04303 hypothetical protein 27 9.5 At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 27 9.5 >At2g39440.1 68415.m04841 expressed protein Length = 773 Score = 32.3 bits (70), Expect = 0.33 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = +3 Query: 507 NDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQD 671 +D+++ LDS IKE + E G D +ES D S IL + +G+ P +D Sbjct: 592 SDEESALDSAIKESKESEPIGFLDTQESRDSSYIDDIL-AEVLLGDKNCVPGKRD 645 >At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing protein / MATH domain-containing protein weak similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain Length = 1055 Score = 26.6 bits (56), Expect(2) = 0.95 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 630 SGVGEVEGAPSVQDDESSTMDEDIAEGGVAS 722 +GV E +G S DD SST D + GVA+ Sbjct: 558 NGVAERKGL-STMDDSSSTCSNDSIQSGVAN 587 Score = 22.6 bits (46), Expect(2) = 0.95 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +3 Query: 537 IKEPESEEAEGLGDAEESPDQSISSA-ILPTDS 632 I E +E+ + LGD + D SSA IL DS Sbjct: 489 IAESSAEKPDTLGDVSDVSDSVDSSAEILQLDS 521 >At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing protein / MATH domain-containing protein weak similarity to ubiquitin-specific protease 12 [Arabidopsis thaliana] GI:11993471; contains Pfam profile PF00917: MATH domain Length = 1055 Score = 26.6 bits (56), Expect(2) = 0.95 Identities = 14/31 (45%), Positives = 18/31 (58%) Frame = +3 Query: 630 SGVGEVEGAPSVQDDESSTMDEDIAEGGVAS 722 +GV E +G S DD SST D + GVA+ Sbjct: 558 NGVAERKGL-STMDDSSSTCSNDSIQSGVAN 587 Score = 22.6 bits (46), Expect(2) = 0.95 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +3 Query: 537 IKEPESEEAEGLGDAEESPDQSISSA-ILPTDS 632 I E +E+ + LGD + D SSA IL DS Sbjct: 489 IAESSAEKPDTLGDVSDVSDSVDSSAEILQLDS 521 >At5g40450.1 68418.m04905 expressed protein Length = 2910 Score = 29.9 bits (64), Expect = 1.8 Identities = 21/62 (33%), Positives = 28/62 (45%) Frame = +3 Query: 495 EFAPNDQDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDD 674 E A ND + SMIKEP +E + D ES ++ S IL G+ G + Sbjct: 2227 ERAINDSASSEVSMIKEPADQEEKKGDDVVESNEKDFVSDILEAKRLHGDKSGEAEKIKE 2286 Query: 675 ES 680 ES Sbjct: 2287 ES 2288 Score = 27.5 bits (58), Expect = 9.5 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 2/88 (2%) Frame = +1 Query: 247 SKCDVTTEPEELAANGGPTSSSDVLDVEPSIAPXAQEEHPVVEQGNADAEDEMD--IDET 420 +K + + PE + P V+D P P + V+E+ + +++++ D Sbjct: 908 TKEETVSVPESIELEEQPQEERSVIDPTPLQKPTLESPSEVLEESSKTVDEKIEEKTDSI 967 Query: 421 ASGAMNEESAYIGDNCLSTPADTEENSP 504 G + +E + D TP E + P Sbjct: 968 ELGEIAQEERSVTD---LTPLQEESSQP 992 >At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to gb|U06698 neuronal kinesin heavy chain from Homo sapiens and contains a PF|00225 Kinesin motor domain. EST gb|AA042507 comes from this gene; identical to cDNA MKRP1 mRNA for kinesin-related protein, GI:16902291, kinesin-related protein [Arabidopsis thaliana] GI:16902292 Length = 890 Score = 29.9 bits (64), Expect = 1.8 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +3 Query: 504 PNDQDNQLDSMIKEPESEEAEG-LGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDES 680 P D ++ LD M K+ + G LG + ++ LPTD + G+PS + Sbjct: 524 PRDGNSSLDEMTKDRRKNKTRGMLGWLKLKKSDGVAGT-LPTDGNQSQASGSPSSSSKYT 582 Query: 681 ST 686 T Sbjct: 583 QT 584 >At2g27050.1 68415.m03250 ethylene-insensitive3-like1 (EIL1) identical to ethylene-insensitive3-like1 GI:2224927 from [Arabidopsis thaliana] Length = 584 Score = 29.5 bits (63), Expect = 2.4 Identities = 20/38 (52%), Positives = 25/38 (65%) Frame = +1 Query: 304 SSSDVLDVEPSIAPXAQEEHPVVEQGNADAEDEMDIDE 417 SSS LDV P P A++E PVVE + +DEMD+DE Sbjct: 17 SSSTSLDVCP--LPQAEQE-PVVEDVDY-TDDEMDVDE 50 >At5g04460.1 68418.m00443 expressed protein Length = 863 Score = 29.1 bits (62), Expect = 3.1 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Frame = +3 Query: 432 YERGISVYRR*-----LSFYTCRY*REFAPNDQDNQLDSMIKEPESEEAEGLGDAEESPD 596 +ERG+ + R +SF +C P D+DN+ D +++ E EG AE S Sbjct: 21 FERGLEEFMRGHLDECISFGSCSSVHN--PEDEDNEDDQLVRRRRRSELEGDNLAESSAA 78 Query: 597 QSISSAIL 620 + S IL Sbjct: 79 RRRQSQIL 86 >At1g22450.1 68414.m02806 cytochrome c oxidase subunit 6b, putative (COX6b) nearly identical to subunit 6b of cytochrome c oxidase [Arabidopsis thaliana] GI:6518353 Length = 191 Score = 29.1 bits (62), Expect = 3.1 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = +1 Query: 349 AQEEHPVVEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSPQ 507 A+EE PV E+ + E++ + ++ +E A DN TPA EEN+ + Sbjct: 52 AKEESPV-EEAVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENNDE 103 >At5g15020.1 68418.m01761 paired amphipathic helix repeat-containing protein similar to transcription co-repressor Sin3 [Xenopus laevis] GI:4960210; contains Pfam profile PF02671: Paired amphipathic helix repeat Length = 1377 Score = 28.7 bits (61), Expect = 4.1 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Frame = +1 Query: 295 GPTSSSDVLDVEPSIAPXAQEEHPVVEQG--NADAEDEMDIDETASGAMNEESAYIGDNC 468 G + + V+ + + A+ EH V +G + DA+DE D + +G + IGD C Sbjct: 976 GDSEDNFVVYEDRELKATAKTEHSVEAEGENDEDADDEDGDDASEAGEDASGTESIGDEC 1035 Query: 469 LSTPADTEE 495 EE Sbjct: 1036 SQDDNGVEE 1044 >At3g09170.1 68416.m01088 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain Length = 1000 Score = 28.7 bits (61), Expect = 4.1 Identities = 12/45 (26%), Positives = 19/45 (42%) Frame = +1 Query: 370 VEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSP 504 V Q D +DEMD+D + A E G+ + ++ P Sbjct: 365 VNQAKGDGDDEMDVDGSGVAAEEREECAAGEGVDGLDGEANKDGP 409 >At3g04820.1 68416.m00522 expressed protein contains PFam profile PF01142: Uncharacterized protein family UPF0024; expression supported by MPSS Length = 747 Score = 28.7 bits (61), Expect = 4.1 Identities = 15/51 (29%), Positives = 24/51 (47%) Frame = +3 Query: 546 PESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESSTMDED 698 P ++ E +G EE D+S+ S P DSG ++ + E T + D Sbjct: 640 PMNKPVEKVGSTEEIEDESMKSDTNPHDSGETNLKDQTDSNEAEKDTGNPD 690 >At1g63200.1 68414.m07142 hypothetical protein Length = 216 Score = 28.7 bits (61), Expect = 4.1 Identities = 17/61 (27%), Positives = 28/61 (45%) Frame = +1 Query: 265 TEPEELAANGGPTSSSDVLDVEPSIAPXAQEEHPVVEQGNADAEDEMDIDETASGAMNEE 444 T EELA ++SD D++ S HP + + A+DE D E ++ +E Sbjct: 43 TPEEELALMTKQVNASDGFDIDFSSFLCVFNYHPAILHSDQFADDEFDTTEDLLKSLAQE 102 Query: 445 S 447 + Sbjct: 103 A 103 >At1g34610.1 68414.m04301 Ulp1 protease family protein contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain Length = 997 Score = 28.7 bits (61), Expect = 4.1 Identities = 12/45 (26%), Positives = 19/45 (42%) Frame = +1 Query: 370 VEQGNADAEDEMDIDETASGAMNEESAYIGDNCLSTPADTEENSP 504 V Q D +DEMD+D + A E G+ + ++ P Sbjct: 365 VNQAKGDGDDEMDVDGSGVAAEEREECAAGEGVDGLDGEANKDGP 409 >At3g50690.1 68416.m05546 leucine-rich repeat family protein Length = 447 Score = 28.3 bits (60), Expect = 5.5 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Frame = +3 Query: 507 NDQDNQLDSMIKEPESE-EAEGLGDAEESPDQSISSAILPTDSGVGE-VEGAPSVQDDES 680 +D+D++ D +E E E + E G E D+ + + +G E V+G V +DE Sbjct: 165 DDEDDEEDEEDEEEEEEGDEEDPGSGEIDGDERAEAPRM--SNGHSERVDGVVDVDEDEE 222 Query: 681 STMDEDIAE 707 S ++D +E Sbjct: 223 SDAEDDESE 231 Score = 27.5 bits (58), Expect = 9.5 Identities = 14/53 (26%), Positives = 27/53 (50%) Frame = +3 Query: 519 NQLDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDE 677 N ++ + ++ + +E E + D PDQS++S+ P + +G DDE Sbjct: 393 NDIEPINEDNDPDEEEEVEDDLPIPDQSLASSSRPKRKRDDDDDGEDDDDDDE 445 >At1g24490.1 68414.m03084 60 kDa inner membrane family protein similar to chloroplast membrane protein (ALBINO3) (GI:3927828) [Arabidopsis thaliana] Length = 1013 Score = 28.3 bits (60), Expect = 5.5 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = +3 Query: 540 KEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAPSVQDDESS 683 K E +E E ++ SA+ T G V G PS+Q DE++ Sbjct: 945 KAHEQDEKSDTAIVAEDDKKTELSAVDETSDGTVAVNGKPSIQKDETT 992 >At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive effector-related contains similarity to SEN1, a positive effector of tRNA-splicing endonuclease [Saccharomyces cerevisiae] gi|172574|gb|AAB63976 Length = 1939 Score = 27.9 bits (59), Expect = 7.2 Identities = 12/37 (32%), Positives = 18/37 (48%) Frame = +3 Query: 513 QDNQLDSMIKEPESEEAEGLGDAEESPDQSISSAILP 623 QDN +D + E E E + L +S I+ +LP Sbjct: 656 QDNMMDLTVDETEKESLKNLPSLHKSHQPDINKTLLP 692 >At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein similar to chitinase GI:17799 from [Brassica napus]; contains Pfam profiles PF00182: Chitinase class I, PF00187: Chitin recognition protein Length = 281 Score = 27.5 bits (58), Expect = 9.5 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = +1 Query: 79 INKYTICAVCTLLDHENGIGPCYSQRFSRWRGSVASSR*PG*PGCRYY 222 + K I A+ HE+G CY + +R R S+ P PG YY Sbjct: 133 VAKREIAAMLAQFSHESG-SFCYKEEIARGRYCSPSTTYPCQPGKNYY 179 >At2g35075.1 68415.m04303 hypothetical protein Length = 485 Score = 27.5 bits (58), Expect = 9.5 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Frame = -3 Query: 342 CNRRLYVQNIAAASWTTIRSKFLRLSGHIALAELLSGKSSIVS----ATWLSWLSA 187 CNRR+ +Q + + T IR + RL IA++ K S VS + LSWLS+ Sbjct: 233 CNRRVAIQCVDFSKQTIIRDVW-RLLDSIAVSLASQQKKSSVSLKEVSPSLSWLSS 287 >At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) (PRC2B) (PRS1) identical to GB:AAC32063 from [Arabidopsis thaliana] (Genetics 149 (2), 677-692 (1998)); identical to cDNA proteasome subunit prc2b GI:2511585 Length = 277 Score = 27.5 bits (58), Expect = 9.5 Identities = 16/45 (35%), Positives = 24/45 (53%) Frame = +3 Query: 525 LDSMIKEPESEEAEGLGDAEESPDQSISSAILPTDSGVGEVEGAP 659 +D+ K PE EE G G+AE P+ + +A G G+ + AP Sbjct: 232 IDTFEKVPEEEEDAGEGEAE--PEAAPGAAGTGEQGGSGDQDVAP 274 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,331,988 Number of Sequences: 28952 Number of extensions: 252058 Number of successful extensions: 1014 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 961 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1012 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1575119672 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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