Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021740
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0827 + 32260313-32260525,32261862-32262716 46 2e-05
07_01_0496 - 3730822-3731280 46 4e-05
07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818 44 1e-04
08_02_0786 + 21198247-21198921 44 2e-04
09_04_0363 + 16957949-16958361,16958524-16958527 41 9e-04
06_03_0745 + 24109406-24109921 40 0.003
02_01_0715 - 5346036-5346557 40 0.003
03_06_0270 - 32768979-32769488 39 0.004
08_02_1177 + 24946763-24947275 39 0.005
01_06_0508 - 29897536-29897982 39 0.005
03_06_0269 - 32761354-32761857,32762094-32762190,32762387-327624... 38 0.006
09_04_0568 + 18591757-18592251 38 0.008
02_04_0078 + 19507705-19508169 38 0.011
07_01_0492 - 3708379-3708864 36 0.033
01_06_1213 - 35466954-35467592 29 3.8
12_02_0474 + 19482150-19482152,19482205-19482336,19482513-194826... 28 8.7
05_04_0154 - 18549806-18550161,18550271-18550907 28 8.7
04_04_0383 - 24851496-24851681,24851785-24851882,24851964-248520... 28 8.7
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742... 28 8.7
>01_06_0827 + 32260313-32260525,32261862-32262716
Length = 355
Score = 46.4 bits (105), Expect = 2e-05
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKE 617
LC SGCGFYGNP+T +CSVC+++
Sbjct: 204 LCASGCGFYGNPATLDMCSVCYRQ 227
>07_01_0496 - 3730822-3731280
Length = 152
Score = 45.6 bits (103), Expect = 4e-05
Identities = 15/25 (60%), Positives = 22/25 (88%)
Frame = +3
Query: 543 ALCRSGCGFYGNPSTDGLCSVCFKE 617
A+C +GCGF+G+ +TDGLCS C+K+
Sbjct: 16 AMCAAGCGFFGSAATDGLCSKCYKQ 40
>07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818
Length = 201
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 543 ALCRSGCGFYGNPSTDGLCSVCFKE 617
A+C +GCGF+G+ +T GLCS C+KE
Sbjct: 15 AMCAAGCGFFGSAATGGLCSKCYKE 39
>08_02_0786 + 21198247-21198921
Length = 224
Score = 43.6 bits (98), Expect = 2e-04
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +3
Query: 543 ALCRSGCGFYGNPSTDGLCSVCFKEALK 626
ALC SGCGF+G+ T+ +CS C+++ LK
Sbjct: 79 ALCSSGCGFFGSKETNNMCSKCYRDHLK 106
Score = 40.3 bits (90), Expect = 0.002
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +3
Query: 543 ALCRSGCGFYGNPSTDGLCSVCFKEALK 626
++C +GCGF+G+ +T LCS C+++ LK
Sbjct: 19 SMCANGCGFFGSEATKKLCSKCYRDQLK 46
>09_04_0363 + 16957949-16958361,16958524-16958527
Length = 138
Score = 41.1 bits (92), Expect = 9e-04
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKK 629
+C +GCGF+G+ +T LCS C+++ LK+
Sbjct: 1 MCTNGCGFFGSEATKNLCSKCYRDQLKE 28
Score = 37.9 bits (84), Expect = 0.008
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 543 ALCRSGCGFYGNPSTDGLCSVCFKEALK 626
ALC S CGF+ + T +CS C+++ LK
Sbjct: 61 ALCASSCGFFSSKETKNMCSKCYRDHLK 88
>06_03_0745 + 24109406-24109921
Length = 171
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
LC + CGF+G+ +T +CS C KE + K++Q
Sbjct: 16 LCINNCGFFGSAATMNMCSKCHKEMIMKQEQ 46
>02_01_0715 - 5346036-5346557
Length = 173
Score = 39.5 bits (88), Expect = 0.003
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
LC + CGF+G+ +T +CS C KE + K++Q
Sbjct: 16 LCINNCGFFGSAATMNMCSKCHKEMIMKEEQ 46
>03_06_0270 - 32768979-32769488
Length = 169
Score = 39.1 bits (87), Expect = 0.004
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +3
Query: 543 ALCRSGCGFYGNPSTDGLCSVCFKE 617
A+C +GCGF+G+ +T+ +CS C++E
Sbjct: 22 AMCVTGCGFFGSEATNNMCSRCYRE 46
>08_02_1177 + 24946763-24947275
Length = 170
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = +3
Query: 534 PMEALCRSGCGFYGNPSTDGLCSVCFKEA 620
P LC + CGF GNP+T+ LC CF A
Sbjct: 17 PEMTLCANSCGFPGNPATNNLCQNCFLAA 45
>01_06_0508 - 29897536-29897982
Length = 148
Score = 38.7 bits (86), Expect = 0.005
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 549 CRSGCGFYGNPSTDGLCSVCFKEAL 623
C +GCGF+G+ T GLCS C+++ +
Sbjct: 16 CANGCGFFGSADTRGLCSKCYRQTV 40
>03_06_0269 -
32761354-32761857,32762094-32762190,32762387-32762421,
32763035-32763040
Length = 213
Score = 38.3 bits (85), Expect = 0.006
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKKK 632
LC + CGF+G+ T+ +CS C+++ +K K
Sbjct: 76 LCVNNCGFFGSRMTENMCSKCYRDTVKAK 104
>09_04_0568 + 18591757-18592251
Length = 164
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +3
Query: 534 PMEALCRSGCGFYGNPSTDGLCSVCFKEA 620
P LC + CGF GNP+T LC CF A
Sbjct: 17 PEITLCANSCGFPGNPATQNLCQNCFLAA 45
>02_04_0078 + 19507705-19508169
Length = 154
Score = 37.5 bits (83), Expect = 0.011
Identities = 12/24 (50%), Positives = 19/24 (79%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKE 617
LC + CGF+G+P+T LCS C+++
Sbjct: 14 LCANNCGFFGSPATLDLCSKCYRD 37
>07_01_0492 - 3708379-3708864
Length = 161
Score = 35.9 bits (79), Expect = 0.033
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALK 626
LC + CGF+G+ T+ +CS C+++ +K
Sbjct: 22 LCVNNCGFFGSSMTNNMCSKCYRDFVK 48
>01_06_1213 - 35466954-35467592
Length = 212
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 555 SGCGFYGNPSTDGLCSVCFKEA 620
SGC FYG PS G C ++A
Sbjct: 82 SGCAFYGQPSPPGPCPCPLRQA 103
>12_02_0474 +
19482150-19482152,19482205-19482336,19482513-19482602,
19482649-19482708,19482959-19483058,19483137-19483234,
19483351-19483525,19484167-19484270
Length = 253
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 500 HFNNKFQTLH*CLTSDCTKSTL 435
HF+ + TLH C TSDC K L
Sbjct: 165 HFSRPWFTLHPCGTSDCMKLLL 186
>05_04_0154 - 18549806-18550161,18550271-18550907
Length = 330
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 269 CC*KRSFEPNKCLSKCAVPSAHKQATPRLCGCSQHPPAS 153
CC R F+ + VP+A ++ +L G + PP S
Sbjct: 128 CCKSRGFDCPTHVRSTWVPAARRRERQQLAGAASSPPTS 166
>04_04_0383 -
24851496-24851681,24851785-24851882,24851964-24852063,
24852741-24852899
Length = 180
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 500 HFNNKFQTLH*CLTSDCTKSTL 435
HF+ + TLH C TSDC K L
Sbjct: 123 HFSRPWFTLHPCGTSDCMKLLL 144
>04_03_0289 +
13972020-13972077,13972444-13973301,13973850-13974235,
13974249-13974323,13975824-13976139,13976284-13977113
Length = 840
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +3
Query: 264 TTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLVR 389
T CP++ +T+K N CC + T F+ K V+
Sbjct: 174 TVTCPNEEITEKVARQNCNGTGCCTIELFEATLSAFQFKFVQ 215
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,120,183
Number of Sequences: 37544
Number of extensions: 300702
Number of successful extensions: 676
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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