Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021740
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20) 60 2e-09
SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 4e-07
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37) 34 0.14
SB_4519| Best HMM Match : ZU5 (HMM E-Value=0.28) 31 1.3
SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17) 29 3.9
SB_1105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10) 28 6.7
SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2) 28 8.9
SB_43128| Best HMM Match : DUF713 (HMM E-Value=6.7) 28 8.9
SB_37840| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_21921| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_6800| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_55515| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_48181| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_21846| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_45840| Best HMM Match : zf-AN1 (HMM E-Value=1.2e-20)
Length = 187
Score = 60.1 bits (139), Expect = 2e-09
Identities = 24/43 (55%), Positives = 34/43 (79%), Gaps = 2/43 (4%)
Frame = +3
Query: 513 TMXRESNPME--ALCRSGCGFYGNPSTDGLCSVCFKEALKKKQ 635
+M RE+N + LCR+GCGFYGN +TDG+CS C+K+ L++KQ
Sbjct: 4 SMERETNQTQQPTLCRNGCGFYGNSATDGMCSKCWKDVLRRKQ 46
>SB_31180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/39 (53%), Positives = 28/39 (71%)
Frame = +3
Query: 522 RESNPMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
R +NP E C++GCGFYGNP+ G CSVCF+E K+ +
Sbjct: 14 RLNNP-ELRCKTGCGFYGNPAWQGYCSVCFREVYMKQHK 51
>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
Length = 1188
Score = 33.9 bits (74), Expect = 0.14
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 549 CRSG-CGFYGNPSTDGLCSVCFK 614
CR+ C F+G PS DGLCS C++
Sbjct: 628 CRNNDCTFFGLPSQDGLCSSCYR 650
Score = 33.1 bits (72), Expect = 0.24
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +3
Query: 549 CRSGCGFYGNPSTDGLCSVCFKEALKKK 632
C GC FY T LCS C E L+K+
Sbjct: 303 CSQGCTFYATAETAFLCSKCLNEYLRKE 330
Score = 32.3 bits (70), Expect = 0.41
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 537 MEALC-RSGCGFYGNPSTDGLCSVCFKEALK 626
+++ C R GC YG P T+G CS C + ++
Sbjct: 1118 LQSKCVRPGCQMYGAPETNGYCSKCLMDNMR 1148
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 507 YGTMXRESNPMEALCRS-GCGFYGNPSTDGLCSVCFKEALKKKQQ 638
Y T A C++ GC +G P+ G+C CF + +K+ Q
Sbjct: 1025 YNTTSTSYTQPGAPCQTKGCLKFGTPAKKGMCEKCFNKYQQKQAQ 1069
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 558 GCGFYGNPSTDGLCSVCFKEALKK 629
GC F+GN + LCS C+ L++
Sbjct: 905 GCQFFGNKEMNFLCSSCYARTLEE 928
>SB_4519| Best HMM Match : ZU5 (HMM E-Value=0.28)
Length = 403
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = -2
Query: 312 YTIATSVSGPLKDTLLLKKKFRTKQMSFQVRSPFSSQTSDTTSVRL*SASTG 157
Y+ V P+ ++ + KF ++S +V PF +S+T+S+RL G
Sbjct: 215 YSREVKVVKPMTVAIVKRLKFTRFEVSVEVTFPFEHPSSETSSIRLLCGENG 266
>SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L D +S F++ + + ENLR + +++HS
Sbjct: 31 YKYLPDRISKFFASSFHTFENLRRISSDRHS 61
>SB_25986| Best HMM Match : Myosin_head (HMM E-Value=1.4e-17)
Length = 1189
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/45 (44%), Positives = 23/45 (51%)
Frame = +3
Query: 261 STTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESKLVRIV 395
S VC SK TQ Y+ K EHKPDV WP+ + LV V
Sbjct: 384 SVAVCWSKE-TQL-SIYSLVKTAKDIEHKPDVVWPSAQPILVSTV 426
>SB_1105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Frame = -2
Query: 216 PFSSQTSDTTSVRL*SASTGITM-------NGYKTIICKTKLMYCYCE 94
P S + DT +R S G+ + YK +CKTKL CY +
Sbjct: 171 PLSRKAKDTVKIRRLSIFQGLAWWHNQMPKSNYKQHLCKTKLHRCYMQ 218
>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
Length = 416
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -1
Query: 229 PSAQSLQLTNKRHHVCAVVVSIHRHH 152
PS+ S+ + + HH + ++ IH HH
Sbjct: 144 PSSSSIIIIHHHHHPSSSIIIIHHHH 169
>SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2)
Length = 604
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 135 YKYLSNRISKFFASSFHTFENLRRISSDRHS 165
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 171 YKYLSNRISKFFASSFHTFENLRRISSDRHS 201
>SB_43128| Best HMM Match : DUF713 (HMM E-Value=6.7)
Length = 251
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 144 YKYLSNRISKFFASSFHTFENLRRISSDRHS 174
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 180 YKYLSNRISKFFASSFHTFENLRRISSDRHS 210
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 216 YKYLSNRISKFFASSFHTFENLRRISSDRHS 246
>SB_37840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 34 YKYLSNRISKFFASSFHTFENLRRISSDRHS 64
>SB_21921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 132
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 98 YKYLSNRISKFFASSFHTFENLRRISSDRHS 128
>SB_6800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 34 YKYLSNRISKFFASSFHTFENLRRISSDRHS 64
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 106 YKYLSNRISKFFASSFHTFENLRRISSDRHS 136
>SB_55515| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 106 YKYLSNRISKFFASSFHTFENLRRISSDRHS 136
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 142 YKYLSNRISKFFASSFHTSENLRRISSDRHS 172
>SB_48181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 106 YKYLSNRISKFFASSFHTSENLRRISSDRHS 136
>SB_21846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +2
Query: 5 YKFLDDFLSNFYSKTNNH*ENLRMMWNNKHS 97
YK+L + +S F++ + + ENLR + +++HS
Sbjct: 70 YKYLSNRISKFFASSFHTFENLRRISSDRHS 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,293,842
Number of Sequences: 59808
Number of extensions: 382056
Number of successful extensions: 878
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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