Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021740
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein c... 40 0.002
At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein c... 40 0.002
At1g12440.2 68414.m01438 zinc finger (AN1-like) family protein c... 40 0.002
At1g12440.1 68414.m01437 zinc finger (AN1-like) family protein c... 40 0.002
At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein c... 39 0.004
At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein c... 38 0.005
At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein c... 38 0.005
At4g25380.1 68417.m03651 zinc finger (AN1-like) family protein c... 38 0.007
At1g51200.1 68414.m05759 zinc finger (AN1-like) family protein c... 38 0.009
At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein c... 37 0.012
At4g14225.1 68417.m02195 zinc finger (AN1-like) family protein c... 36 0.028
At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein c... 36 0.036
At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein c... 33 0.15
At2g24650.1 68415.m02944 transcriptional factor B3 family protei... 31 0.59
At4g36360.2 68417.m05164 beta-galactosidase, putative / lactase,... 28 7.3
At4g36360.1 68417.m05163 beta-galactosidase, putative / lactase,... 28 7.3
At1g54550.1 68414.m06221 F-box family protein contains Pfam:PF00... 28 7.3
At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR) domai... 27 9.6
>At4g12040.2 68417.m01916 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
LC +GCGF+G+PS LCS C++ ++ Q
Sbjct: 18 LCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQ 48
>At4g12040.1 68417.m01915 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 175
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
LC +GCGF+G+PS LCS C++ ++ Q
Sbjct: 18 LCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQ 48
>At1g12440.2 68414.m01438 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 168
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
LC GCGF+G+PS LCS C+++ ++Q
Sbjct: 18 LCVKGCGFFGSPSNMNLCSKCYRDIRATEEQ 48
>At1g12440.1 68414.m01437 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 168
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
LC GCGF+G+PS LCS C+++ ++Q
Sbjct: 18 LCVKGCGFFGSPSNMNLCSKCYRDIRATEEQ 48
>At2g27580.1 68415.m03342 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 163
Score = 38.7 bits (86), Expect = 0.004
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQ 635
LC + CGF+G+ +T LCS CF++ ++Q
Sbjct: 12 LCANNCGFFGSTATQNLCSKCFRDLQHQEQ 41
>At4g22820.2 68417.m03293 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 176
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 513 TMXRESNPMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
T + S P LC GCGF+G+PS LCS C++ ++ Q
Sbjct: 12 TQSQASEPK--LCVKGCGFFGSPSNMDLCSKCYRGICAEEAQ 51
>At4g22820.1 68417.m03292 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 176
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +3
Query: 513 TMXRESNPMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
T + S P LC GCGF+G+PS LCS C++ ++ Q
Sbjct: 12 TQSQASEPK--LCVKGCGFFGSPSNMDLCSKCYRGICAEEAQ 51
>At4g25380.1 68417.m03651 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 130
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +3
Query: 531 NPMEAL-CRSGCGFYGNPSTDGLCSVCFKEAL 623
N EAL C GCG YG + LCS+C+K+++
Sbjct: 3 NETEALPCEGGCGLYGTRVNNNLCSLCYKKSV 34
>At1g51200.1 68414.m05759 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 173
Score = 37.5 bits (83), Expect = 0.009
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
LC + CGF+G+ +T +CS C K+ L +++Q
Sbjct: 17 LCTNNCGFFGSAATMNMCSKCHKDMLFQQEQ 47
>At2g36320.1 68415.m04458 zinc finger (AN1-like) family protein
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 161
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
LC + CGF+G+ +T LCS C+ + K+QQ
Sbjct: 15 LCVNNCGFFGSSATMNLCSNCYGDLCLKQQQ 45
>At4g14225.1 68417.m02195 zinc finger (AN1-like) family protein
contains Pfam domains, PF01428: AN1-like Zinc finger and
PF01754: A20-like zinc finger
Length = 125
Score = 35.9 bits (79), Expect = 0.028
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 543 ALCRSGCGFYGNPSTDGLCSVCFKEALK 626
+LC GCGF+ T LCS C+ + LK
Sbjct: 6 SLCIRGCGFFSTSQTKNLCSKCYNDFLK 33
>At3g52800.1 68416.m05818 zinc finger (AN1-like) family protein
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 170
Score = 35.5 bits (78), Expect = 0.036
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 638
LC + CGF G+ +T LCS C+ + K+QQ
Sbjct: 15 LCVNNCGFLGSSATMNLCSNCYGDLCLKQQQ 45
>At3g12630.1 68416.m01572 zinc finger (AN1-like) family protein
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 160
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 546 LCRSGCGFYGNPSTDGLCSVCFKEAL 623
LC + CG NP+T+ +C CF +L
Sbjct: 25 LCTNNCGVTANPATNNMCQKCFNASL 50
>At2g24650.1 68415.m02944 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 from
[Brassica oleracea var. botrytis] GI:3170424,
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 1440
Score = 31.5 bits (68), Expect = 0.59
Identities = 23/83 (27%), Positives = 38/83 (45%)
Frame = +3
Query: 201 FVS*RDCALGKTFVWFETSFSTTVCPSKVLTQK*RSYTTNKENCCAEHKPDVTWPTFESK 380
F D LG++F TT S + T+ S KE+ +EHK + PT +++
Sbjct: 682 FAEANDFKLGESFTMELVWEDTTPMLSLLRTEFRSSKANEKESISSEHKTRESSPTIKNR 741
Query: 381 LVRIVITAEYWKTKRVQY*STFS 449
+V +T E K ++ S +S
Sbjct: 742 IVTPALTPEDVKACKLVTSSNYS 764
>At4g36360.2 68417.m05164 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
SP:P48980 from [Lycopersicon esculentum]
Length = 855
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 275 THCC*KRSFEPNKCLSKCAVPSAHKQATPR 186
+HC +++PNKC + C P+ PR
Sbjct: 674 SHCSYTGTYKPNKCQTGCGQPTQRWYHVPR 703
>At4g36360.1 68417.m05163 beta-galactosidase, putative / lactase,
putative similar to beta-galactosidase precursor
SP:P48980 from [Lycopersicon esculentum]
Length = 856
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 275 THCC*KRSFEPNKCLSKCAVPSAHKQATPR 186
+HC +++PNKC + C P+ PR
Sbjct: 674 SHCSYTGTYKPNKCQTGCGQPTQRWYHVPR 703
>At1g54550.1 68414.m06221 F-box family protein contains Pfam:PF00646
F-box domain; contains TIGRFAM TIGR01640 : F-box protein
interaction domain
Length = 362
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +2
Query: 188 VVSLVCELKGLRTWKDICLVRXXXXXXSVSFKGPDTEVAIVYYQQGKLLC 337
V SL +L+G+R+ +D L+ S+ K E++ VY+ G LLC
Sbjct: 63 VCSLRLDLQGIRSEED--LIDLSIKQISIPNKVDQVEISQVYHCDGLLLC 110
>At1g57670.1 68414.m06544 Toll-Interleukin-Resistance (TIR)
domain-containing protein domain signature TIR exists,
suggestive of a disease resistance protein.
Length = 387
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 377 TFKCRPSYVWLMFGTAVFLVGSIRSLL 297
TF + WL FG+AV L+GS+ ++
Sbjct: 282 TFNIALALPWLWFGSAVELIGSVLGII 308
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,717
Number of Sequences: 28952
Number of extensions: 251350
Number of successful extensions: 553
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -