Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021739
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 185 5e-48
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21... 173 2e-44
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 156 4e-39
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 118 9e-28
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 111 1e-25
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 106 4e-24
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 102 5e-23
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 102 5e-23
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc... 100 2e-22
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 85 8e-18
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 29 0.72
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 27 2.2
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 2.2
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 26 5.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 6.7
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 6.7
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 6.7
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 185 bits (451), Expect = 5e-48
Identities = 83/91 (91%), Positives = 86/91 (94%)
Frame = +3
Query: 255 FLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETIC 434
F+SQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPE+NYLFLGDYVDRGKQSLE IC
Sbjct: 45 FISQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLEVIC 104
Query: 435 LLLAYKIKYPENFFLLRGNHECASIIGFMGF 527
LLLAYKIKYPENFF+LRGNHECASI GF
Sbjct: 105 LLLAYKIKYPENFFILRGNHECASINRIYGF 135
Score = 173 bits (421), Expect = 2e-44
Identities = 73/82 (89%), Positives = 78/82 (95%)
Frame = +2
Query: 509 NRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQIRRIM 688
NRIYGFYDECKRRYNIKLWKTFTDCFNCLP+AAI+DEKIF HGGLSPDL +M+QI+RIM
Sbjct: 130 NRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFTMHGGLSPDLNSMDQIQRIM 189
Query: 689 RPTDVPDQGLLCDLLWSDPDKD 754
RPTDVPD GLLCDLLWSDPDKD
Sbjct: 190 RPTDVPDTGLLCDLLWSDPDKD 211
Score = 49.6 bits (113), Expect = 5e-07
Identities = 21/40 (52%), Positives = 33/40 (82%)
Frame = +1
Query: 136 ELNIDNVIKKLLKVRGEKPGMNVQLTEIEIKGLCLKSREI 255
++++D++I +LL+VRG +PG VQL+E EI+ LC K+REI
Sbjct: 5 DVDLDSIIDRLLEVRGSRPGRQVQLSEDEIRFLCNKAREI 44
>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
Sds21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 173 bits (422), Expect = 2e-44
Identities = 79/91 (86%), Positives = 83/91 (91%)
Frame = +3
Query: 255 FLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETIC 434
FLSQP+LLELEAPLKICGDIHGQY DLLRLFEYGG+PP++NYLFLGDYVDRGKQSLE IC
Sbjct: 42 FLSQPMLLELEAPLKICGDIHGQYSDLLRLFEYGGYPPDANYLFLGDYVDRGKQSLEVIC 101
Query: 435 LLLAYKIKYPENFFLLRGNHECASIIGFMGF 527
LL AYKIKYPENFFLLRGNHE ASI GF
Sbjct: 102 LLFAYKIKYPENFFLLRGNHEFASINRIYGF 132
Score = 168 bits (409), Expect = 7e-43
Identities = 67/82 (81%), Positives = 79/82 (96%)
Frame = +2
Query: 509 NRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQIRRIM 688
NRIYGFYDECKRRY+IKLWKTFTDCFNC+PVAA++DEKIFC HGGLSPDL +++QI+RI+
Sbjct: 127 NRIYGFYDECKRRYSIKLWKTFTDCFNCMPVAAVIDEKIFCMHGGLSPDLNSLDQIQRII 186
Query: 689 RPTDVPDQGLLCDLLWSDPDKD 754
RPTD+PD GLLCDL+WSDP+KD
Sbjct: 187 RPTDIPDTGLLCDLVWSDPEKD 208
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1
Query: 136 ELNIDNVIKKLLKVRGEKPGMNVQLTEIEIKGLCLKSREI 255
+ +ID +I+KL+K R KP VQL++ EI+ LC SR I
Sbjct: 2 DYDIDAIIEKLVKARNGKPSKQVQLSDAEIRYLCTTSRSI 41
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 156 bits (378), Expect = 4e-39
Identities = 71/95 (74%), Positives = 78/95 (82%)
Frame = +3
Query: 243 IKRNFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSL 422
++ FLSQP LLEL P+KI GD+HGQY DL+RLFE GFPP SNYLFLGDYVDRGKQSL
Sbjct: 226 VREIFLSQPTLLELTPPVKIVGDVHGQYSDLIRLFEMCGFPPSSNYLFLGDYVDRGKQSL 285
Query: 423 ETICLLLAYKIKYPENFFLLRGNHECASIIGFMGF 527
ETI LL YKI+YPENFFLLRGNHECA+I GF
Sbjct: 286 ETILLLFLYKIRYPENFFLLRGNHECANITRVYGF 320
Score = 134 bits (323), Expect = 2e-32
Identities = 57/78 (73%), Positives = 64/78 (82%)
Frame = +2
Query: 512 RIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQIRRIMR 691
R+YGFYDECKRR NIK+WKTF + FNCLP+A++V KIFC HGGLSP L M+ IR I R
Sbjct: 316 RVYGFYDECKRRCNIKIWKTFINTFNCLPIASVVAGKIFCVHGGLSPSLSHMDDIREIPR 375
Query: 692 PTDVPDQGLLCDLLWSDP 745
PTDVPD GLL DLLWSDP
Sbjct: 376 PTDVPDYGLLNDLLWSDP 393
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 118 bits (284), Expect = 9e-28
Identities = 54/114 (47%), Positives = 72/114 (63%)
Frame = +3
Query: 261 SQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLL 440
S+ L+E++AP+ +CGDIHGQYYDL++LFE GG P + YLFLGDYVDRG S+E + L
Sbjct: 103 SEDNLIEVDAPVTVCGDIHGQYYDLMKLFEVGGNPANTQYLFLGDYVDRGYFSIECLLYL 162
Query: 441 LAYKIKYPENFFLLRGNHECASIIGFMGFTMSAKGGITLNYGRRSQTASTAFPL 602
A KI YP+ +LLRGNHECA + + F + + + A PL
Sbjct: 163 WALKIWYPKTLWLLRGNHECAHLTDYFTFKLECTHKYNIKVYEACLQSFNALPL 216
Score = 89.8 bits (213), Expect = 4e-19
Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Frame = +2
Query: 500 CQHNRIY-GFYDECKRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQI 676
C H Y F EC +YNIK+++ FN LP+AAI++++ C HGGLSP+L + I
Sbjct: 182 CAHLTDYFTFKLECTHKYNIKVYEACLQSFNALPLAAIMNKQFLCVHGGLSPELHTLNDI 241
Query: 677 RRIMRPTDVPDQGLLCDLLWSDPDKD 754
R I R + P GL+CDLLWSDP +D
Sbjct: 242 RMINRFCEPPTHGLMCDLLWSDPLED 267
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 111 bits (266), Expect = 1e-25
Identities = 48/99 (48%), Positives = 69/99 (69%), Gaps = 1/99 (1%)
Frame = +3
Query: 234 MFEIKRNFLS-QPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRG 410
M ++ + LS + + + P+ +CGDIHGQ++DL+ LF GG P++NYLF+GDYVDRG
Sbjct: 31 MCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFHDLMELFNIGGPSPDTNYLFMGDYVDRG 90
Query: 411 KQSLETICLLLAYKIKYPENFFLLRGNHECASIIGFMGF 527
S+ET+ LL+A+KI+YP+ +LRGNHE I GF
Sbjct: 91 YHSVETVSLLIAFKIRYPQRITILRGNHESRQITQVYGF 129
Score = 107 bits (258), Expect = 1e-24
Identities = 42/83 (50%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Frame = +2
Query: 503 QHNRIYGFYDECKRRY-NIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQIR 679
Q ++YGFYDEC R+Y N +W+ FTD F+ LP+ A+++++IFC HGGLSP + ++ +R
Sbjct: 122 QITQVYGFYDECLRKYGNANVWQYFTDLFDYLPLTALIEDRIFCLHGGLSPSIDTLDHVR 181
Query: 680 RIMRPTDVPDQGLLCDLLWSDPD 748
+ R +VP +G +CDLLWSDPD
Sbjct: 182 ILDRVQEVPHEGPICDLLWSDPD 204
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 106 bits (254), Expect = 4e-24
Identities = 44/79 (55%), Positives = 58/79 (73%)
Frame = +3
Query: 291 PLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN 470
P+ +CGDIHGQ++DL+ LF+ GG P+ NYLF+GDYVDRG S+ET+ LL+A K++YP
Sbjct: 64 PVTVCGDIHGQFHDLMELFKIGGDVPDMNYLFMGDYVDRGYHSVETVSLLVAMKLRYPNR 123
Query: 471 FFLLRGNHECASIIGFMGF 527
+LRGNHE I GF
Sbjct: 124 ITILRGNHESRQITQVYGF 142
Score = 105 bits (251), Expect = 9e-24
Identities = 40/83 (48%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Frame = +2
Query: 503 QHNRIYGFYDECKRRY-NIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQIR 679
Q ++YGFYDEC R+Y + +WK FT+ F+ P+ A+++++IFC HGGLSP + +++ +R
Sbjct: 135 QITQVYGFYDECLRKYGSANVWKHFTNLFDYFPLTALIEDRIFCLHGGLSPSIDSLDHVR 194
Query: 680 RIMRPTDVPDQGLLCDLLWSDPD 748
+ R +VP +G +CDLLWSDPD
Sbjct: 195 TLDRVQEVPHEGPMCDLLWSDPD 217
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 102 bits (245), Expect = 5e-23
Identities = 47/94 (50%), Positives = 61/94 (64%)
Frame = +3
Query: 246 KRNFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLE 425
K + + ++ L P+ + GDIHGQ+ DLL +F GG P +NYLFLGDYVDRG S+E
Sbjct: 30 KEVLMQESNVVRLSTPITVVGDIHGQFDDLLEIFRIGGPCPYTNYLFLGDYVDRGYYSIE 89
Query: 426 TICLLLAYKIKYPENFFLLRGNHECASIIGFMGF 527
TI LL+ K++YP+ LLRGNHE I GF
Sbjct: 90 TITLLICLKLRYPKRITLLRGNHESRGITQTYGF 123
Score = 93.9 bits (223), Expect = 2e-20
Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Frame = +2
Query: 518 YGFYDECKRRY-NIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQIRRIMRP 694
YGFY EC R+Y N +WK FTD F+ L ++A +D+ IFC HGGLSP +Q ++QI + R
Sbjct: 121 YGFYSECLRKYGNANVWKYFTDIFDFLTLSATIDDTIFCVHGGLSPSIQHIDQILVLDRF 180
Query: 695 TDVPDQGLLCDLLWSDPD 748
+ P +G + DL+WSDPD
Sbjct: 181 REFPHEGPMADLVWSDPD 198
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 102 bits (245), Expect = 5e-23
Identities = 45/95 (47%), Positives = 60/95 (63%)
Frame = +3
Query: 243 IKRNFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSL 422
+K + + + + P+ +CGDIHGQ+YDLL LF GG P +NY+F+GD+VDRG SL
Sbjct: 29 VKVILMEESNIQPVRTPVTVCGDIHGQFYDLLELFRVGGELPSTNYIFMGDFVDRGYFSL 88
Query: 423 ETICLLLAYKIKYPENFFLLRGNHECASIIGFMGF 527
ET L + K +YP+ LLRGNHE I GF
Sbjct: 89 ETFTLFMLLKARYPDKITLLRGNHESRQITQVYGF 123
Score = 99 bits (238), Expect = 3e-22
Identities = 39/83 (46%), Positives = 59/83 (71%), Gaps = 1/83 (1%)
Frame = +2
Query: 503 QHNRIYGFYDECKRRY-NIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQIR 679
Q ++YGFYDEC+ +Y N +WK F+ L +AA++D KI C HGGLSP+++ ++QIR
Sbjct: 116 QITQVYGFYDECQTKYGNANVWKYCCQVFDFLTLAAVIDNKILCVHGGLSPEVRTLDQIR 175
Query: 680 RIMRPTDVPDQGLLCDLLWSDPD 748
+ R ++P +G CDL+WSDP+
Sbjct: 176 ILARAQEIPHEGSFCDLMWSDPE 198
>SPBC26H8.05c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 100 bits (240), Expect = 2e-22
Identities = 46/82 (56%), Positives = 55/82 (67%)
Frame = +3
Query: 282 LEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKY 461
+ +P+ ICGDIHGQ +DLL LF GG P + YLFLGD+VDRG S+ET LLL K KY
Sbjct: 44 ISSPVTICGDIHGQLHDLLELFRIGGSCPGTKYLFLGDFVDRGFYSVETFLLLLTLKCKY 103
Query: 462 PENFFLLRGNHECASIIGFMGF 527
P+ L+RGNHE I GF
Sbjct: 104 PKEMTLIRGNHESRQITQVYGF 125
Score = 99.5 bits (237), Expect = 5e-22
Identities = 40/83 (48%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Frame = +2
Query: 503 QHNRIYGFYDECKRRY-NIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGLSPDLQAMEQIR 679
Q ++YGFYDEC R+Y + +W+ + F+ L + A+VD K+FC HGGLSP + +++QIR
Sbjct: 118 QITQVYGFYDECVRKYGSANVWRYCCEIFDYLSLGALVDGKVFCVHGGLSPSISSIDQIR 177
Query: 680 RIMRPTDVPDQGLLCDLLWSDPD 748
+ R +VP +G +CDLLWSDP+
Sbjct: 178 LLDRKQEVPHEGAMCDLLWSDPE 200
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 85.4 bits (202), Expect = 8e-18
Identities = 41/79 (51%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +3
Query: 294 LKICGDIHGQYYDLLRLFEYGGFP-PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN 470
L ICGD HGQY+DLL +F+ G P P + YLF GD+VDRG S E L AYK+ YP+
Sbjct: 212 LVICGDTHGQYFDLLNIFKLHGPPSPTNKYLFNGDFVDRGSWSTEVAFTLYAYKLLYPDA 271
Query: 471 FFLLRGNHECASIIGFMGF 527
F+ RGNHE + GF
Sbjct: 272 VFINRGNHETDDMNKVYGF 290
Score = 65.7 bits (153), Expect = 7e-12
Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Frame = +2
Query: 509 NRIYGFYDECKRRYNIKLWKTFTDCFNCLPVAAIVDEKIFCCHGGL-SPDLQAMEQIRRI 685
N++YGF EC+ +YN + + F++ F+ LP+ +++ + HGGL S D ++Q+R I
Sbjct: 285 NKVYGFEGECRSKYNERTFNIFSETFSLLPLGSLISDSYLVVHGGLFSDDNVTLDQLRNI 344
Query: 686 MR-PTDVPDQ-GLLCDLLWSDP 745
R P Q GL+ ++LW+DP
Sbjct: 345 DRFSKKQPGQSGLMMEMLWTDP 366
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 29.1 bits (62), Expect = 0.72
Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +2
Query: 578 DCFNCLPVAAIVDEKIFCC-HGGLSPD 655
D ++C+ + A+ ++FCC HGGL+PD
Sbjct: 646 DPYSCVRILAL---ELFCCSHGGLTPD 669
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -3
Query: 172 LVIFLLRYRCLTHLCLCLPSDILYVYEIWLNRIGKRREMFKIFADYE 32
++ +LL Y+C + +P D+LY +E + IG R K++ YE
Sbjct: 820 MLTYLLAYQCYFLIQPEMPLDMLYEFE---DVIGYVRPSMKVYMHYE 863
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 503 GTLVVSA*KKEILGIFNLVGEEQAYCFQRLLATVHIVSEE 384
G+L+ K ++NL G YCF RL T++ EE
Sbjct: 987 GSLLDDGTKLSDRSVYNLFGNMSLYCFFRLFHTLYSRLEE 1026
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 26.2 bits (55), Expect = 5.1
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 219 RN*RAMFEIKRNFLSQPILLELEAPLKICGDIHGQYYD-LLRLFEYGGF 362
RN A++ + + +S P+LL + L I I+ YYD LL++FE F
Sbjct: 159 RNGNAIYRDQLSKVSFPVLLLIPTRLGI-DSINESYYDQLLQVFEIRSF 206
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 364 LRSPTISSSETMWTVASSRWKQYACSSPTRLNI 462
+R+ I S+ +W+ A W Y+ P R+ +
Sbjct: 2097 VRACFIQGSQQVWSAALWYWGSYSTDKPNRMGV 2129
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 736 PEQVAEQTLVGNVRRPHDPPDLFHSLQVRRQTAVTT 629
P + ++ VR+ PP LFH L + A+TT
Sbjct: 69 PSSASSRSQSKYVRKEALPPQLFHHLDSAKDKALTT 104
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 357 GFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKY 461
GF + + L LG Y RGKQS + L ++ Y
Sbjct: 482 GFGEDLDCLILGGYFGRGKQSGKINSFLCGLRMDY 516
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,268,429
Number of Sequences: 5004
Number of extensions: 69813
Number of successful extensions: 219
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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