Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021737
         (745 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    30   0.017
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   1.1  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    24   1.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    24   1.1  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 427 PTAESGLGGSVAATGVPALVQARGHIIERFPNFP 528
           P+  SGLGG ++   +PAL    GH +E  P FP
Sbjct: 81  PSLSSGLGGGLSGMPMPALGFGLGHPLESVP-FP 113


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 432 SGERPWRQRCCYRRPSTRSG*RTH 503
           +GERP++ + C R  +T+   +TH
Sbjct: 158 TGERPFKCKICGRAFTTKGNLKTH 181


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 432 SGERPWRQRCCYRRPSTRSG*RTH 503
           SGE+P+R   C RR S  S   TH
Sbjct: 45  SGEKPFRCPVCDRRFSQSSSVTTH 68



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 432 SGERPWRQRCCYRRPSTRS 488
           SGERP+R R C +  S  S
Sbjct: 73  SGERPYRCRLCKKAFSDSS 91


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 432 SGERPWRQRCCYRRPSTRSG*RTH 503
           SGE+P+R   C RR S  S   TH
Sbjct: 301 SGEKPFRCPVCDRRFSQSSSVTTH 324



 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 432 SGERPWRQRCCYRRPSTRS 488
           SGERP+R R C +  S  S
Sbjct: 329 SGERPYRCRLCKKAFSDSS 347


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,369
Number of Sequences: 336
Number of extensions: 3606
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)