Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021737
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 111 1e-25
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 111 1e-25
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 27 3.7
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c... 26 4.9
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom... 26 4.9
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p... 25 8.6
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 111 bits (266), Expect = 1e-25
Identities = 48/58 (82%), Positives = 52/58 (89%)
Frame = +2
Query: 239 EQGGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
E+ G +QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 56 EKAG-HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112
Score = 109 bits (261), Expect = 5e-25
Identities = 46/78 (58%), Positives = 64/78 (82%)
Frame = +3
Query: 510 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 689
+IPE+PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLRNRRHVQRR 205
Query: 690 GPLIIFNKDQGLTRAFRN 743
GPL++FN+D G+ +AFRN
Sbjct: 206 GPLVVFNEDTGIVKAFRN 223
Score = 73.7 bits (173), Expect = 2e-14
Identities = 34/60 (56%), Positives = 44/60 (73%)
Frame = +3
Query: 75 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 254
++ ARP VS+Y+ K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 445 LGGSVAATGVPALVQARGHIIERFPNFP 528
+ +VAA+GVP+L+ ARGH IE P P
Sbjct: 124 IASAVAASGVPSLLLARGHRIEEIPEVP 151
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 111 bits (266), Expect = 1e-25
Identities = 48/58 (82%), Positives = 52/58 (89%)
Frame = +2
Query: 239 EQGGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
E+ G +QTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH
Sbjct: 56 EKAG-HQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWH 112
Score = 108 bits (260), Expect = 7e-25
Identities = 46/78 (58%), Positives = 64/78 (82%)
Frame = +3
Query: 510 KIPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRK 689
+IPE+PLVV D VQ KTK+AV L+ +KA+ D++KV S++LRAGKGK+RNRR +QR+
Sbjct: 146 EIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLRNRRHVQRR 205
Query: 690 GPLIIFNKDQGLTRAFRN 743
GPL++FN+D G+ +AFRN
Sbjct: 206 GPLVVFNEDAGIVKAFRN 223
Score = 74.5 bits (175), Expect = 1e-14
Identities = 35/60 (58%), Positives = 44/60 (73%)
Frame = +3
Query: 75 LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 254
++ ARP VS+YS K +V LPFVFKAPIRPDLV VH +++KN RQPY VS++AG
Sbjct: 1 MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKAG 59
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +1
Query: 445 LGGSVAATGVPALVQARGHIIERFPNFP 528
+ +VAA+GVP+L+ ARGH IE P P
Sbjct: 124 ISSAVAASGVPSLLLARGHRIEEIPEVP 151
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +2
Query: 74 SIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSG--PGQ*CSRFYVQELEAALLREQG 247
SI SP+ SVG + D + S + P+ + G + P C Y ++L +A
Sbjct: 312 SITSPSSSVGQIPQPTDHSALSPSKPMSISGTESPNPDPASLCYSSY-EDLYSAT----- 365
Query: 248 GWYQTSAESWG 280
W+ AES G
Sbjct: 366 SWHSDMAESSG 376
>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 136 APCTVSLFSEYTDTKGRATDRLISLL 59
A C V ++SEYT G ++ L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515
>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 149 PVRVQGAHTSGPGQ*CSRFYVQELEAALLREQ 244
PV VQG HT G +F Q L A +L Q
Sbjct: 29 PVDVQGCHTLGERNDPKKFRFQTLVALMLSSQ 60
>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 718
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 469 GVPALVQARGHIIERFPNFPW 531
G +L G IER PN PW
Sbjct: 90 GFQSLALYHGATIERMPNLPW 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,953
Number of Sequences: 5004
Number of extensions: 58510
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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