SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021737
         (745 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...   114   6e-26
07_01_0578 + 4295386-4296489,4297394-4297507                          114   8e-26
10_02_0199 + 6668902-6669293,6669825-6669882                           35   0.059
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61...    34   0.14 
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988     33   0.24 
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57...    31   0.73 
03_01_0123 + 965657-966214,967827-967995,968632-969236,969333-96...    30   2.2  
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149     30   2.2  
09_03_0046 + 11862923-11863112,11863225-11863406,11863522-118636...    29   2.9  
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496...    29   3.9  
05_03_0163 + 9070781-9071320                                           29   3.9  
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    28   9.0  
08_02_1437 - 27096364-27097252,27098931-27099022,27099382-270996...    28   9.0  
08_02_1285 - 25881091-25881798                                         28   9.0  
07_03_0329 + 16840051-16840917,16840999-16841342,16841444-168415...    28   9.0  
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389...    28   9.0  

>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score =  114 bits (275), Expect = 6e-26
 Identities = 48/53 (90%), Positives = 51/53 (96%)
 Frame = +2

Query: 254 YQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
           +QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWH
Sbjct: 63  HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWH 115



 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 38/78 (48%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
 Frame = +3

Query: 513 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 692
           +PE PLVV+D ++ I KT Q++  L+++ A++D  K   S  +RAGKGKMRNRR I RKG
Sbjct: 150 VPEFPLVVSDSIESIEKTAQSIKVLKQIGAYADAEKTKDSVAIRAGKGKMRNRRYINRKG 209

Query: 693 PLIIFNKD-QGLTRAFRN 743
           PLI++  +   + +AFRN
Sbjct: 210 PLIVYGTEGSKVVKAFRN 227



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +3

Query: 78  SVARPLVSVYS-EKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 254
           + ARPLVSV + E       A   +P V +APIRPD+V   H  +S N RQPY VS+ AG
Sbjct: 3   AAARPLVSVKALEGDMATDSAGIQMPQVLRAPIRPDVVTFTHKLLSCNRRQPYAVSRRAG 62



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +1

Query: 445 LGGSVAATGVPALVQARGHIIERFPNFP 528
           +  ++AAT VP+LV ARGH IE  P FP
Sbjct: 127 VASALAATAVPSLVLARGHRIEGVPEFP 154


>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score =  114 bits (274), Expect = 8e-26
 Identities = 47/53 (88%), Positives = 51/53 (96%)
 Frame = +2

Query: 254 YQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWH 412
           +QTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WR+WH
Sbjct: 64  HQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWH 116



 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 38/78 (48%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
 Frame = +3

Query: 513 IPELPLVVADKVQEINKTKQAVIFLRRLKAWSDILKVYKSQRLRAGKGKMRNRRRIQRKG 692
           +PELPLV++D  + I KT QA+  L+++ A++D  K   S  +R GKGKMRNRR I RKG
Sbjct: 151 VPELPLVISDSAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKG 210

Query: 693 PLIIFNKD-QGLTRAFRN 743
           PLI++  +   + +AFRN
Sbjct: 211 PLIVYGTEGSKIVKAFRN 228



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
 Frame = +3

Query: 87  RPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAG 254
           RPLVSV + + +  T   ++  L  VF+AP+RPD+V  VH  +S N RQPY VS+ AG
Sbjct: 6   RPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAG 63



 Score = 34.3 bits (75), Expect = 0.10
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 445 LGGSVAATGVPALVQARGHIIERFPNFP 528
           +  ++AAT VP+LV ARGH IE  P  P
Sbjct: 128 VASALAATSVPSLVLARGHRIETVPELP 155


>10_02_0199 + 6668902-6669293,6669825-6669882
          Length = 149

 Score = 35.1 bits (77), Expect = 0.059
 Identities = 21/47 (44%), Positives = 23/47 (48%)
 Frame = +2

Query: 236 REQGGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 376
           RE GG     A+SW TGRA A + R R GG  R    A  N   G R
Sbjct: 30  REGGG----GAQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72


>12_01_0073 +
           613316-613447,613611-613802,614067-614232,614460-614845
          Length = 291

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 50  ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 205
           ASL   N  I +PTF +G   K     G S    + + GAHT G  + C  F
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176


>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
          Length = 292

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 20/52 (38%), Positives = 23/52 (44%)
 Frame = +2

Query: 50  ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 205
           ASL   N  +  P+F V          G SQA  V + GAHT G  Q C  F
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVGQAQ-CQNF 175


>11_01_0072 +
           570345-570476,570640-570831,571095-571260,571487-571872
          Length = 291

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +2

Query: 50  ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 205
           ASL   N  I +PT  +G   K     G S    + + GAHT G  + C  F
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIGQAR-CVNF 176


>03_01_0123 +
           965657-966214,967827-967995,968632-969236,969333-969434
          Length = 477

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 221 EAALLREQGGWYQTSAESWGTGRAV 295
           EAALLR  G W + + + WG G  V
Sbjct: 367 EAALLRAAGDWARGAGQRWGVGDVV 391


>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
          Length = 248

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 335 TYEYHH-HGHAEFGRQHVRYPMIRHWFGTSLLAHAVGLPRVLGH 207
           T+++HH HGH  FGR H  +P   H  G  ++ +  G P    H
Sbjct: 144 THDHHHGHGHHLFGRDH--WPASHHPAG-GMVNYGGGAPYYAAH 184


>09_03_0046 +
           11862923-11863112,11863225-11863406,11863522-11863634,
           11863894-11864140,11864333-11864452,11864601-11864604,
           11864800-11864846,11864992-11865068,11865381-11865431,
           11865519-11865567,11865694-11865718,11866226-11866344
          Length = 407

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 400 AALASSRQPPTAES-GLGGSVAATGVPALVQARGHIIERFPNFPWL*PTKSRRSTRPNRL 576
           A L ++  PP   +  + G  AA G+P LV+A    I      P+L P  S   +  +  
Sbjct: 13  ALLRAAHVPPAPRARSIRGLAAARGLPPLVRATAAAIAPSSFCPYL-PRLSSARSFSSST 71

Query: 577 SSS*GASRHGLIS 615
           S S GAS  G +S
Sbjct: 72  SCSAGASLGGAVS 84


>08_02_0105 +
           12448808-12449152,12449218-12449409,12449520-12449685,
           12449771-12450201
          Length = 377

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 50  ASLK*RNESIGSPTFSVGVFRKERDGAGCSQAPPVRVQGAHTSGPGQ*CSRF 205
           ASL+  N ++ +PT  V    ++    G S    V + GAHT G  + C+ F
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIGKAR-CTTF 247


>05_03_0163 + 9070781-9071320
          Length = 179

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 236 REQGGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQG 346
           R  GGW Q  AE WG G   ++     GGG  RS +G
Sbjct: 15  RGAGGWSQR-AEGWGGGGGRSQRAEGGGGGGGRSRRG 50


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 392 SWGRTYVHHDTCYRRHPDRTYEYHH 318
           SWGR   H D   RR P R+  +HH
Sbjct: 303 SWGRD--HADNRLRRSPSRSSNFHH 325


>08_02_1437 -
           27096364-27097252,27098931-27099022,27099382-27099654,
           27099872-27100819
          Length = 733

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 382 RPHEALAALASSRQPPTAESGLGGSVAATGVPALVQARGHII 507
           R ++ L+ +A   +PP  +S   G  A  G PA+    G+ +
Sbjct: 653 RVNDWLSEIAKPTEPPPPQSDADGEEAGGGAPAVANGGGNTV 694


>08_02_1285 - 25881091-25881798
          Length = 235

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 113 KERDGAGCSQAPPVRVQGAHTSGPG 187
           +E DG G ++A  V  +GAH +G G
Sbjct: 173 EEEDGEGSAEAMEVEEEGAHLAGAG 197


>07_03_0329 +
           16840051-16840917,16840999-16841342,16841444-16841574,
           16841671-16841792,16841877-16841983,16842104-16842236,
           16842342-16842458,16842560-16842667,16842716-16842742,
           16842759-16842830,16843462-16843584,16843671-16843833,
           16844140-16844264,16844355-16844489,16844574-16844677,
           16844772-16844834,16844930-16844993,16845186-16845318,
           16845414-16845487,16845603-16845697,16845799-16845830,
           16846201-16846355
          Length = 1097

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 245 GGWYQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 358
           GG++      +G GR        RGGG  R G+G  G+
Sbjct: 169 GGYHGDGEAGYGRGRGGRDYDGGRGGGGRRGGRGGGGS 206


>07_01_0524 +
           3892340-3894625,3894995-3895109,3895204-3895298,
           3895929-3896167,3896524-3896610,3896967-3897066,
           3897908-3898115,3898224-3899422
          Length = 1442

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
 Frame = +2

Query: 212 QELEAALLREQGGWYQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGR 376
           +++  A   ++GG    S  S   G++V +  + R+R    H  G G+ G++ +   GG+
Sbjct: 64  EKVSGAKSTDEGGGSDKSKGS-EVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGK 122

Query: 377 MFAPTKP-WR 403
           M  P  P WR
Sbjct: 123 MLRPGFPKWR 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,751,293
Number of Sequences: 37544
Number of extensions: 506911
Number of successful extensions: 1808
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1803
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -